ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1076

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1076_1
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(2..556)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XEQ4_METSD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_1000_bf_scaffold_1076_2
unknown

Not on your lists

comp(791..1102)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1076_3
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1233..3182)
DNA (1950bp) protein (650aa)
Putative uncharacterized protein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WB66_RALSL
Uncharacterized protein {ECO:0000313|EMBL:KJV25984.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1076_4
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3184..4215)
DNA (1032bp) protein (344aa)
TniB family protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZX35_METMM
Uncharacterized protein {ECO:0000313|EMBL:KJV25983.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
TniB family protein
SCNpilot_expt_1000_bf_scaffold_1076_5
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4212..6176)
DNA (1965bp) protein (655aa)
Putative integrase n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WAN2_RALSL rbh
integrase catalytic subunit; K07497 putative transposase rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_1076_6
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6157..6786)
DNA (630bp) protein (210aa)
TnsA endonuclease n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZX07_METMM
TnsA endonuclease
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_1076_7
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7045..7428)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI000377174F
helix-turn-helix domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_1076_8
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7786..8778
DNA (993bp) protein (331aa)
Putative DeoR family regulatory protein n=5 Tax=Burkholderia pseudomallei RepID=Q63WE8_BURPS rbh
DeoR family transcriptional regulator rbh
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_1076_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9148..9327
DNA (180bp) protein (60aa)
Uncharacterized protein n=5 Tax=Burkholderia pseudomallei RepID=I1WLP5_BURPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAH34936.1}; TaxID=272560 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain K96243).;"
SCNpilot_expt_1000_bf_scaffold_1076_10
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9324..9683
DNA (360bp) protein (120aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
SCNpilot_expt_1000_bf_scaffold_1076_11
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9695..9976
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Vibrio furnissii (strain DSM 14383 / NCTC 11218) RepID=F0LX50_VIBFN
Uncharacterized protein {ECO:0000313|EMBL:AKH36882.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1076_12
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10012..10851
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LHK8_BURGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA58935.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
SCNpilot_expt_1000_bf_scaffold_1076_13
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11095..12579)
DNA (1485bp) protein (495aa)
Type I restriction enzyme subunit M n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5NF09_9BURK rbh
hsdM-5; type I restriction enzyme subunit M rbh
Type I restriction enzyme subunit M {ECO:0000313|EMBL:AGX88749.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
SCNpilot_expt_1000_bf_scaffold_1076_14
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12576..13370)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036AAF12
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_1076_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13367..15076)
DNA (1710bp) protein (570aa)
SMC domain-containing protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKP3_9RHIZ rbh
Variovorax paradoxus strain MEDvA23 contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34872.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SMC domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1076_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15079..16833)
DNA (1755bp) protein (585aa)
restriction modification system DNA specificity domain-containing protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3] rbh
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI0003610C5F rbh
Restriction modification system DNA specificity domain-containing protein {ECO:0000313|EMBL:AEM47018.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
SCNpilot_expt_1000_bf_scaffold_1076_17
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16830..19610)
DNA (2781bp) protein (927aa)
Type-1 restriction enzyme R protein {ECO:0000313|EMBL:EXI87466.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EXI87466.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Type I restriction enzyme subunit R n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5NET6_9BURK rbh
hsdR-4; type I restriction enzyme subunit R rbh
SCNpilot_expt_1000_bf_scaffold_1076_18
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19685..21808)
DNA (2124bp) protein (708aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL48_VARPS rbh
hypothetical protein rbh
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
Displaying 18 items

View Taxonomy