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SCNpilot_expt_1000_bf_scaffold_1142

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1142_1
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..965)
DNA (963bp) protein (321aa)
Transcriptional accessory protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QN57_AZOSU
transcriptional accessory protein; K06959 uncharacterized protein
Transcriptional accessory protein {ECO:0000313|EMBL:AEV26897.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1142_2
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1090..3372)
DNA (2283bp) protein (761aa)
Putative uncharacterized protein n=1 Tax=Janthinobacterium lividum RepID=A1X1M8_9BURK rbh
Signal peptide protein {ECO:0000313|EMBL:KHA77586.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_1142_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3369..6329)
DNA (2961bp) protein (987aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RP22_ACCPU rbh
multi-sensor signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1142_4
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6461..6883
DNA (423bp) protein (141aa)
Flagellar assembly factor FliW n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLE2_ACCPU
flagellar assembly protein FliW; K13626 flagellar assembly factor FliW
Flagellar assembly factor FliW {ECO:0000256|HAMAP-Rule:MF_01185}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1142_5
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6988..7542)
DNA (555bp) protein (185aa)
Transferase hexapeptide repeat n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CG1_DECAR
Carnitine operon protein CaiE {ECO:0000313|EMBL:KFB75235.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hexapaptide repeat-containing transferase
SCNpilot_expt_1000_bf_scaffold_1142_6
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7576..8787)
DNA (1212bp) protein (404aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000313|EMBL:EXI90749.1}; EC=3.6.3.- {ECO:0000313|EMBL:EXI90749.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM25_ACCPU rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1142_7
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8781..9515)
DNA (735bp) protein (245aa)
ABC transporter related protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47GV8_DECAR rbh
ABC transporter related; K02003 putative ABC transport system ATP-binding protein rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_1000_bf_scaffold_1142_8
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9515..10723)
DNA (1209bp) protein (403aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM27_ACCPU rbh
Macrolide-specific efflux protein MacA {ECO:0000313|EMBL:KFB69382.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein rbh
SCNpilot_expt_1000_bf_scaffold_1142_9
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10720..12183)
DNA (1464bp) protein (488aa)
Outer membrane efflux protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM28_ACCPU rbh
outer membrane efflux protein rbh
Protein CyaE {ECO:0000256|PIRNR:PIRNR001892}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1142_10
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12341..12889
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AGP0_9PROT
YaeQ family protein {ECO:0000313|EMBL:BAO29482.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1142_11
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12903..13259
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM29_ACCPU
Uncharacterized protein {ECO:0000313|EMBL:KFB74573.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1142_12
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13256..13876
DNA (621bp) protein (207aa)
Acyl carrier protein phosphodiesterase {ECO:0000313|EMBL:EXI80876.1}; EC=3.1.4.14 {ECO:0000313|EMBL:EXI80876.1};; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM30_ACCPU
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1142_13
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13887..14432)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAR1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO37011.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1142_14
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14543..15658)
DNA (1116bp) protein (372aa)
Uncharacterized protein involved in outer membrane biogenesis n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QQ08_AZOSU rbh
hypothetical protein rbh
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_1142_15
unknown

Not on your lists

15820..16071
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1142_16
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16129..16446)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL97_ACCPU
Uncharacterized protein {ECO:0000313|EMBL:EXI69492.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1142_17
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16477..16953)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JN13_BURP8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACC74406.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_1000_bf_scaffold_1142_18
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16970..17791)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z6G3_9NEIS rbh
Uncharacterized protein {ECO:0000313|EMBL:EEG07538.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1142_19
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17922..18860
DNA (939bp) protein (313aa)
Ribosome biogenesis GTPase A n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL95_ACCPU rbh
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
HSR1-like GTP-binding protein; K14540 ribosome biogenesis GTPase A rbh
SCNpilot_expt_1000_bf_scaffold_1142_20
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18884..19180
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q3L2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:BAO31276.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1142_21
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19168..20079)
DNA (912bp) protein (304aa)
Membrane protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47X10_COLP3
membrane protein
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_1142_22
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20095..20487)
DNA (393bp) protein (131aa)
4-oxalocrotonate tautomerase; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346DD71
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:ACB79490.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_expt_1000_bf_scaffold_1142_23
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20584..21456
DNA (873bp) protein (291aa)
Transcriptional regulator n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMY1_AZOSU
transcriptional regulator
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_1142_24
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21498..22469)
DNA (972bp) protein (324aa)
Peptide ABC transporter substrate-binding protein n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DH58_9PSED
putative transmembrane sensor
Putative transmembrane sensor {ECO:0000313|EMBL:BAN48123.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_expt_1000_bf_scaffold_1142_25
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22523..23053)
DNA (531bp) protein (177aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJ24_XANP2
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABS68017.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_1142_26
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23203..25425
DNA (2223bp) protein (741aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036F5FC6
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_1142_27
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25510..25641
DNA (132bp) protein (44aa)
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_1142_28
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25719..27152
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI0003740D21
radical SAM protein; K06871 uncharacterized protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_1142_29
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27142..28260
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI0003740D21
Radical SAM domain-containing protein; K06871 uncharacterized protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Displaying 29 items

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