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SCNpilot_expt_1000_bf_scaffold_1518

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1518_1
unknown

Not on your lists

3..83
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1518_2
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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497..883
DNA (387bp) protein (129aa)
Cytochrome c, mono-and diheme variants family n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNU0_AZOSU
cytochrome c, mono- and diheme variants family
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1518_3
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1042..1680
DNA (639bp) protein (213aa)
Phosphate transport regulator related to PhoU n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHG6_AZOSU rbh
phosphate transport regulator related to PhoU; K07220 hypothetical protein rbh
Phosphate transport regulator related to PhoU {ECO:0000313|EMBL:AEV27359.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1518_4
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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1693..2700
DNA (1008bp) protein (336aa)
Phosphate transporter n=1 Tax=gamma proteobacterium HdN1 RepID=E1VJ59_9GAMM rbh
phosphate transporter; K03306 inorganic phosphate transporter, PiT family rbh
Phosphate transporter {ECO:0000313|EMBL:CBL44851.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_expt_1000_bf_scaffold_1518_5
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2813..3025)
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H01_DECAR
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_1518_6
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3272..3592
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR13_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV35694.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1518_7
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3882..5063
DNA (1182bp) protein (394aa)
hydrogenase (NiFe) small subunit HydA (EC:1.12.99.6); K06282 hydrogenase small subunit [EC:1.12.99.6] rbh
Hydrogenase (NiFe) small subunit HydA {ECO:0000313|EMBL:ACV35585.1}; EC=1.12.99.6 {ECO:0000313|EMBL:ACV35585.1};; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Hydrogenase (NiFe) small subunit HydA n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPZ9_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1518_8
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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5065..6108
DNA (1044bp) protein (348aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPZ8_ACCPU rbh
Formate dehydrogenase-N subunit beta {ECO:0000313|EMBL:KFB76869.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hydrogenase 2 protein HybA rbh
SCNpilot_expt_1000_bf_scaffold_1518_9
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6111..7292
DNA (1182bp) protein (394aa)
Polysulphide reductase, NrfD n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q478N2_DECAR rbh
hydrogenase 2 b cytochrome subunit rbh
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1518_10
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7317..9020
DNA (1704bp) protein (568aa)
Hydrogenase-2 large chain {ECO:0000313|EMBL:KFB76867.1}; EC=1.12.99.6 {ECO:0000313|EMBL:KFB76867.1};; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
nickel-dependent hydrogenase large subunit; K06281 hydrogenase large subunit [EC:1.12.99.6] rbh
Nickel-dependent hydrogenase large subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPZ1_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1518_11
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9020..9571
DNA (552bp) protein (184aa)
hydrogenase maturation protease; K08567 hydrogenase 2 maturation protease [EC:3.4.24.-]
Hydrogenase maturation protease n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPZ0_ACCPU
Hydrogenase maturation protease {ECO:0000313|EMBL:ACV35576.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1518_12
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9571..9876
DNA (306bp) protein (102aa)
Hydrogenase expression/formation protein (HUPF/HYPC) n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPY9_ACCPU
Hydrogenase assembly chaperone HypC/HupF {ECO:0000313|EMBL:EXI90666.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hydrogenase expression/formation protein HypC/HupF; K04653 hydrogenase expression/formation protein HypC
SCNpilot_expt_1000_bf_scaffold_1518_13
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9917..10582
DNA (666bp) protein (222aa)
(NiFe) hydrogenase assembly chaperone, HybE family n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QH08_AZOSU
Hydrogenase-2 operon protein HybE {ECO:0000313|EMBL:KFB71759.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
(NiFe) hydrogenase assembly chaperone, HybE family
SCNpilot_expt_1000_bf_scaffold_1518_14
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10677..11252
DNA (576bp) protein (192aa)
Transcription elongation factor GreB n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QH07_AZOSU
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
transcription elongation factor GreB; K04760 transcription elongation factor GreB
SCNpilot_expt_1000_bf_scaffold_1518_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11249..13432
DNA (2184bp) protein (728aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QH06_AZOSU
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AEV27339.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1518_16
unknown

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comp(13981..14127)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1518_17
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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14894..15514
DNA (621bp) protein (207aa)
Chaperone protein HtpG n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR15_ACCPU
heat shock protein 90; K04079 molecular chaperone HtpG
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1518_18
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15685..16212
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR16_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV35697.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1518_19
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16348..17514)
DNA (1167bp) protein (389aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1JWY1_BURCC rbh
Mandelate racemase {ECO:0000313|EMBL:KAK44279.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
mandelate racemase/muconate lactonizing protein rbh
SCNpilot_expt_1000_bf_scaffold_1518_20
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17627..18526
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLG7_9BURK rbh
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EDM84848.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1518_21
unknown

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comp(18689..18835)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1518_22
unknown

Not on your lists

comp(19314..19487)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1518_23
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19518..20267)
DNA (750bp) protein (250aa)
Membrane protein, putative n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AA38_COLFT rbh
hypothetical protein; K07090 rbh
Membrane protein, putative {ECO:0000313|EMBL:AEK62972.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_1000_bf_scaffold_1518_24
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20389..21300
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T4N9_BURPP rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACD16550.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_expt_1000_bf_scaffold_1518_25
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21429..22823)
DNA (1395bp) protein (465aa)
membrane carboxypeptidase/penicillin-binding protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Membrane carboxypeptidase/penicillin-binding protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QQ26_AZOSU
Membrane carboxypeptidase/penicillin-binding protein {ECO:0000313|EMBL:AEV27133.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1518_26
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23952..24854)
DNA (903bp) protein (301aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Thauera sp. 63 RepID=N6X7N2_9RHOO rbh
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:ENO75185.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
excisionase family DNA binding domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1518_27
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24851..25465)
DNA (615bp) protein (205aa)
Molybdenum cofactor guanylyltransferase n=1 Tax=Azoarcus sp. KH32C RepID=H0PYI3_9RHOO
mobA; molybdopterin-guanine dinucleotide biosynthesis protein A
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1518_28
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25462..26277)
DNA (816bp) protein (272aa)
Putative formate dehydrogenase accessory protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KB98_AZOSB rbh
fdhD; putative formate dehydrogenase accessory protein; K02379 FdhD protein rbh
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1518_29
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26392..26922
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KB97_AZOSB
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1518_30
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26919..27569
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KB96_AZOSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL96102.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Displaying 30 items

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