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SCNpilot_expt_1000_bf_scaffold_1725

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1725_1
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159..2252
DNA (2094bp) protein (698aa)
iron-sulfur binding protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000379B3B4 rbh
iron-sulfur binding protein rbh
Putative iron-sulfur binding protein {ECO:0000313|EMBL:CAI07778.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_1725_2
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2249..2887
DNA (639bp) protein (213aa)
Cytoplasmic chaperone TorD family protein n=2 Tax=Thauera RepID=C4KCB3_THASP
cytoplasmic chaperone TorD family protein
Cytoplasmic chaperone TorD family protein {ECO:0000313|EMBL:ACR02304.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
SCNpilot_expt_1000_bf_scaffold_1725_3
unknown

Not on your lists

2913..3146
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1725_4
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3163..6051
DNA (2889bp) protein (963aa)
Probable formate dehydrogenase alpha subunit {ECO:0000313|EMBL:CAL96098.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CAL96098.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
fdhA2; formate dehydrogenase subunit alpha (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] rbh
Probable formate dehydrogenase alpha subunit n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KB92_AZOSB rbh
SCNpilot_expt_1000_bf_scaffold_1725_5
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6080..6736
DNA (657bp) protein (219aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=2 Tax=Thauera RepID=C4KCB0_THASP rbh
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; K00124 formate dehydrogenase, beta subunit rbh
4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KIN89234.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
SCNpilot_expt_1000_bf_scaffold_1725_6
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6733..6954
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037AF4BA
hypothetical protein
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_expt_1000_bf_scaffold_1725_7
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6964..8046
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036CA446 rbh
fdhC; putative formate dehydrogenase, gamma subunit rbh
Putative formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:BAL22425.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_1725_8
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8043..8381
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00036ACD37
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1725_9
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8533..9315
DNA (783bp) protein (261aa)
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:EXI86355.1}; EC=3.2.2.21 {ECO:0000313|EMBL:EXI86355.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
HhH-GPD family protein; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] rbh
HhH-GPD family protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN26_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1725_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9171..9647)
DNA (477bp) protein (159aa)
Ferritin-like protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PU53_9RHOO
Ferritin-like protein {ECO:0000313|EMBL:BAP58094.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ferritin-like protein
SCNpilot_expt_1000_bf_scaffold_1725_11
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9657..9977)
DNA (321bp) protein (107aa)
Ferredoxin-like protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI76_AZOSU
ferredoxin-like protein
Ferredoxin-like protein {ECO:0000313|EMBL:AEV27479.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1725_12
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9974..11053)
DNA (1080bp) protein (360aa)
FixC oxidoreductase subunit with FAD/NAD(P)-binding domain n=1 Tax=mine drainage metagenome RepID=E6QRR4_9ZZZZ
Protein fixC {ECO:0000313|EMBL:GAO37809.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
fixC_etfD; electron-transferring-flavoprotein dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1725_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11129..11290)
DNA (162bp) protein (54aa)
protein fixC n=1 Tax=Thiobacillus thioparus RepID=UPI00037D00AB
fixC_etfD; electron-transferring-flavoprotein dehydrogenase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1725_14

Not on your lists

comp(11287..12444)
DNA (1158bp) protein (386aa)
Protein fixB n=1 Tax=mine drainage metagenome RepID=E6QHC8_9ZZZZ rbh
Protein fixB {ECO:0000313|EMBL:CBI06642.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
fixB; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_1725_15

Not on your lists

comp(12441..13310)
DNA (870bp) protein (290aa)
FixA n=1 Tax=uncultured bacterium DX-1A-14 RepID=M1L785_9BACT rbh
FixA {ECO:0000313|EMBL:AGF34081.1}; TaxID=1292053 species="Bacteria; environmental samples.;" source="uncultured bacterium DX-1A-14.;"
fixA; flavoprotein subunit subunit beta; K03521 electron transfer flavoprotein beta subunit
SCNpilot_expt_1000_bf_scaffold_1725_16
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13483..14451
DNA (969bp) protein (323aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=ACCA_DECAR rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_1000_bf_scaffold_1725_17
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14420..15844
DNA (1425bp) protein (475aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] rbh
tRNA(Ile)-lysidine synthase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN28_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1725_18
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15887..19018)
DNA (3132bp) protein (1044aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003800B73 rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_1725_19
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19103..19720)
DNA (618bp) protein (206aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN31_ACCPU rbh
Transcriptional regulatory protein FixJ {ECO:0000313|EMBL:EXI68277.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
two component LuxR family transcriptional regulator; K11712 two-component system, LuxR family, response regulator DctR rbh
SCNpilot_expt_1000_bf_scaffold_1725_20
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19717..21711)
DNA (1995bp) protein (665aa)
multi-sensor signal transduction histidine kinase; K11711 two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN32_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1725_21
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21866..23206
DNA (1341bp) protein (447aa)
C4-dicarboxylate transport protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=DCTA_DECAR rbh
C4-dicarboxylate transporter DctA; K11103 aerobic C4-dicarboxylate transport protein rbh
C4-dicarboxylate transport protein {ECO:0000255|HAMAP-Rule:MF_01300}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
SCNpilot_expt_1000_bf_scaffold_1725_22
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23334..24338
DNA (1005bp) protein (335aa)
Probable c4-dicarboxylate-binding periplasmic protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K3Y1_AZOSB rbh
dctP2; c4-dicarboxylate-binding periplasmic protein; K11688 C4-dicarboxylate-binding protein DctP rbh
Probable c4-dicarboxylate-binding periplasmic protein {ECO:0000313|EMBL:CAL93536.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_1725_23
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24413..25117
DNA (705bp) protein (235aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=2 Tax=Thauera RepID=C4KCP3_THASP rbh
tripartite ATP-independent periplasmic transporter DctQ component; K11689 C4-dicarboxylate transporter, DctQ subunit rbh
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ENO83579.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
SCNpilot_expt_1000_bf_scaffold_1725_24
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25114..26397
DNA (1284bp) protein (428aa)
TRAP dicarboxylate transporter, DctM subunit n=2 Tax=Thauera RepID=C4KCP2_THASP rbh
TRAP dicarboxylate transporter subunit DctM; K11690 C4-dicarboxylate transporter, DctM subunit rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:KIN90243.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
SCNpilot_expt_1000_bf_scaffold_1725_25
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26601..27029
DNA (429bp) protein (143aa)
nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Nucleoside diphosphate kinase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI75_AZOSU
SCNpilot_expt_1000_bf_scaffold_1725_26
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27055..28149
DNA (1095bp) protein (365aa)
2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] rbh
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Flags:
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI74_AZOSU rbh
SCNpilot_expt_1000_bf_scaffold_1725_27
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28146..28949
DNA (804bp) protein (268aa)
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN38_ACCPU
Type IV pilus biogenesis/stability protein PilW {ECO:0000313|EMBL:KFB72959.1}; Flags: Precursor;; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
type IV pilus biogenesis/stability protein PilW; K02656 type IV pilus assembly protein PilF
SCNpilot_expt_1000_bf_scaffold_1725_28
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28946..29971
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI72_AZOSU
hypothetical protein; K15539 cytoskeleton protein RodZ
Uncharacterized protein {ECO:0000313|EMBL:AEV27475.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1725_29
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29968..31221
DNA (1254bp) protein (418aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN40_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1725_30
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31218..32513
DNA (1296bp) protein (432aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
Histidine--tRNA ligase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN41_ACCPU rbh
Displaying items 1-30 of 50 in total

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