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SCNpilot_expt_1000_bf_scaffold_347

Search features with annotation key words

Displaying items 1-30 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_347_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..808)
DNA (807bp) protein (269aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase I n=1 Tax=Thiobacillus denitrificans RepID=UPI00036324E2
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(805..1605)
DNA (801bp) protein (267aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase I n=1 Tax=Thiobacillus denitrificans RepID=UPI00036324E2
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1617..2063)
DNA (447bp) protein (149aa)
Protein smg homolog id=1307783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Smg protein; K03747 Smg protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2068..3135)
DNA (1068bp) protein (356aa)
DNA-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F8EB0 rbh
SMF protein; K04096 DNA processing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_347_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3166..4455)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BC5F8 rbh
peptidoglycan-binding LysM-like protein
Peptidoglycan-binding LysM-like protein {ECO:0000313|EMBL:AAZ95966.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_347_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4602..5135
DNA (534bp) protein (178aa)
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] rbh
peptide deformylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000382D3A1 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5146..6093
DNA (948bp) protein (316aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A5411 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_347_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6198..7511
DNA (1314bp) protein (438aa)
Fmu, rRNA SAM-dependent methyltransferase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
16S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003632888 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_347_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7465..8100
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000376F0AE rbh
proline rich signal peptide protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_347_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8100..10235
DNA (2136bp) protein (712aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-) rbh
histidine kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003738914 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10232..11506
DNA (1275bp) protein (425aa)
nitrogen assimilation regulatory protein NtrX n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4F3 rbh
two component Fis family transcriptional regulator rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11522..12895
DNA (1374bp) protein (458aa)
potassium transporter peripheral membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003739FD6 rbh
trkA, sapG; potassium transporter peripheral membrane component; K03499 trk system potassium uptake protein TrkA rbh
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:AAZ95973.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_347_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13049..14506
DNA (1458bp) protein (486aa)
potassium transporter Trk n=1 Tax=Thiobacillus denitrificans RepID=UPI000381006D rbh
trk system potassium uptake membrane protein; K03498 trk system potassium uptake protein TrkH
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_347_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14506..14829
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D1484
TPR repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14966..15241
DNA (276bp) protein (92aa)
Probable Fe(2+)-trafficking protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=FETP_THIDA
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15307..16008)
DNA (702bp) protein (234aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037066E2 rbh
phosphate uptake regulator, PhoU; K02039 phosphate transport system protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16081..16485)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372447A
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16482..17423)
DNA (942bp) protein (314aa)
hypothetical protein; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
thiamine monophosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000381CA5F rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17420..18244)
DNA (825bp) protein (275aa)
ATPase AAA n=1 Tax=Thiobacillus denitrificans RepID=UPI0003697500 rbh
ATPase; K06923
ATPase {ECO:0000313|EMBL:AAZ95981.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_347_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18380..18877
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000368A8B4 rbh
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18874..20184)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361E7FC rbh
putative GAF sensor protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_347_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20181..20666)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F308B rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_347_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20671..21897)
DNA (1227bp) protein (409aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (EC:2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
N-acetylglutamate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EFAF3 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_347_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21962..22201)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003632F27
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_347_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22336..22674)
DNA (339bp) protein (113aa)
type 1 pili tip component n=1 Tax=Thiobacillus denitrificans RepID=UPI00037ADFDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ95984.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_347_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22737..23393)
DNA (657bp) protein (219aa)
methylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A45C8 rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_347_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23396..26632)
DNA (3237bp) protein (1079aa)
DNA helicase/exodeoxyribonuclease V subunit A (EC:3.1.11.5); K01144 exodeoxyribonuclease V [EC:3.1.11.5]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CF2E7 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_347_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26625..29264)
DNA (2640bp) protein (880aa)
DNA helicase/exodeoxyribonuclease V subunit B (EC:3.1.11.5); K01144 exodeoxyribonuclease V [EC:3.1.11.5] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381B286 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_347_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29332..29655)
DNA (324bp) protein (108aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B00A9
7Fe ferredoxin; K05524 ferredoxin
7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain {ECO:0000313|EMBL:AAZ95988.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_347_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29816..30142
DNA (327bp) protein (109aa)
thioredoxin; K03671 thioredoxin 1
Thioredoxin id=1350671 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 188 in total

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