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SCNpilot_expt_1000_bf_scaffold_578

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_578_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1471)
DNA (1470bp) protein (490aa)
Chaperone protein DnaK n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=DNAK_THIDA
molecular chaperone protein DnaK; K04043 molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_578_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1531..2064)
DNA (534bp) protein (178aa)
molecular chaperone GrpE n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A7CD
molecular chaperone protein GrpE; K03687 molecular chaperone GrpE
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_578_3
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2472..3329)
DNA (858bp) protein (286aa)
GTP cyclohydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI000361EDF5 rbh
GTP cyclohydrolase
Tax=CG_Hydro_01
SCNpilot_expt_1000_bf_scaffold_578_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3355..3903)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BAA13 rbh
electron transport protein SCO1/SenC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4205..6166
DNA (1962bp) protein (654aa)
chemotaxis protein CheY n=1 Tax=Thiobacillus denitrificans RepID=UPI000360A4E4 rbh
Fis family GAF modulated sigma54 specific transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6168..6668
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FFAE2 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6661..7218
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003643FDB rbh
flavoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_8
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7194..8594
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003642329 rbh
Dihydropteroate synthase DHPS {ECO:0000313|EMBL:EIZ04439.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
dihydropteroate synthase DHPS rbh
SCNpilot_expt_1000_bf_scaffold_578_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8591..9154
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365A732 rbh
hypothetical protein; K09154 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ62585.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_expt_1000_bf_scaffold_578_10
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9151..9846
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361ADB7 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE13230.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_1000_bf_scaffold_578_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9996..11390)
DNA (1395bp) protein (465aa)
GTP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CD4FF rbh
putative GTP-binding protein; K03665 GTP-binding protein HflX rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_578_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11452..12807)
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A5C9E rbh
PLP-dependent enzyme, glutamate decarboxylase
PLP-dependent enzyme, glutamate decarboxylase {ECO:0000313|EMBL:AGA24650.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_1000_bf_scaffold_578_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12850..13440)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C03CC
thioredoxin family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_14
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13539..14171)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378BF1B rbh
Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:EGV33367.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
aspartate/glutamate/uridylate kinase
SCNpilot_expt_1000_bf_scaffold_578_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14156..15580)
DNA (1425bp) protein (475aa)
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85]
anthranilate synthase subunit I n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A5FF3 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_16

Not on your lists

comp(15571..16635)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003652285 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN84522.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
H4MPT-linked C1 transfer pathway protein
SCNpilot_expt_1000_bf_scaffold_578_17
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16619..17593)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DECAE rbh
ATP-grasp fold domain protein, DUF201-type {ECO:0000313|EMBL:EGV33364.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_578_18
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17631..18353
DNA (723bp) protein (241aa)
histidine biosynthesis protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003800977 rbh
Histidine biosynthesis protein {ECO:0000313|EMBL:ACB22974.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_578_19
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18262..19494)
DNA (1233bp) protein (411aa)
queuosine biosynthesis protein QueD; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F38AE rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EGV33362.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
SCNpilot_expt_1000_bf_scaffold_578_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19508..20020)
DNA (513bp) protein (171aa)
formaldehyde-activating enzyme; K10713 formaldehyde-activating enzyme [EC:4.3.-.-] id=12498408 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
formaldehyde-activating enzyme; K10713 formaldehyde-activating enzyme [EC:4.3.-.-]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_21
Methylomicrobium kenyense, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20132..21046)
DNA (915bp) protein (305aa)
Triphosphoribosyl-dephospho-CoA synthase {ECO:0000256|SAAS:SAAS00100821}; EC=2.4.2.52 {ECO:0000256|SAAS:SAAS00100821};; TaxID=269709 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium kenyense.;"
hypothetical protein; K05966 triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B851E rbh
SCNpilot_expt_1000_bf_scaffold_578_22
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21043..21957)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361A70C rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK72336.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
RimK family alpha-L-glutamate ligase
SCNpilot_expt_1000_bf_scaffold_578_23
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21954..22934)
DNA (981bp) protein (327aa)
Methenyltetrahydromethanopterin cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; EC=3.5.4.27 {ECO:0000256|HAMAP-Rule:MF_00486};; Methenyl-H4MPT cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; K01499 methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EC557 rbh
SCNpilot_expt_1000_bf_scaffold_578_24
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22931..24142)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FDC4D rbh
Uncharacterized protein {ECO:0000313|EMBL:KJR61816.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_578_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24132..25031)
DNA (900bp) protein (300aa)
mtdB; methylene-tetrahydromethanopterin dehydrogenase(NAD+/NADP+) (mtdB) (EC:1.5.1.-); K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AEC0C rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25071..26063)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361CAD7 rbh
beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_27
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26338..27579
DNA (1242bp) protein (414aa)
formylmethanofuran dehydrogenase subunit B (EC:1.2.99.5); K00201 formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363270A rbh
Tax=BJP_S1_SUB10_Methylophilales_55_32
SCNpilot_expt_1000_bf_scaffold_578_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27566..29230
DNA (1665bp) protein (555aa)
formylmethanofurane dehydrogenase subunit A; K00200 formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D5813 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_578_29
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29227..30123
DNA (897bp) protein (299aa)
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101); K00672 formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] id=12492988 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101); K00672 formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101]
Formylmethanofuran--tetrahydromethanopterin formyltransferase; EC=2.3.1.101;; H4MPT formyltransferase; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
SCNpilot_expt_1000_bf_scaffold_578_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30120..30929
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003776447 rbh
putative formylmethanofuran dehydrogenase,subunit C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 47 in total

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