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SCNpilot_expt_1000_bf_scaffold_964

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_964_1
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..610)
DNA (609bp) protein (203aa)
hypothetical protein id=12494458 bin=THIO_HI species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_1000_bf_scaffold_964_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(611..1357)
DNA (747bp) protein (249aa)
Peptide chain release factor 2 id=1345796 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
peptide chain release factor 2; K02836 peptide chain release factor 2
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_964_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1712..2995)
DNA (1284bp) protein (428aa)
magnesium transporter MgtC n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F6216 rbh
MgtC family protein rbh
MgtC family protein {ECO:0000313|EMBL:AAZ96875.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_964_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3238..4203
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000369A860 rbh
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_964_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4200..6437
DNA (2238bp) protein (746aa)
diguanylate cyclase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003694CA0
putative diguanylate cyclase protein, sensory box/GGDEF domain
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_964_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6437..7054
DNA (618bp) protein (206aa)
diguanylate cyclase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003694CA0
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_964_7
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7168..7740)
DNA (573bp) protein (191aa)
NADPH-dependent FMN reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003810C96
NADPH-dependent FMN reductase rbh
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADV13581.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_964_8
unknown

Not on your lists

8091..8264
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_964_9
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8663..10066)
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R784_PSEAI rbh
Histone acetyltransferase HPA2 and related acetyltransferase {ECO:0000313|EMBL:BAO81307.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_964_10
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10084..10593)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R1R9_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:BAO81306.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_964_11
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10590..12476)
DNA (1887bp) protein (629aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R1K2_PSEAI rbh
ADP-ribosylglycohydrolase {ECO:0000313|EMBL:BAO81305.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
ADP-ribosylglycohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_964_12
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12636..13541
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R5K0_PSEAI rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAO81304.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_964_13
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13543..15621
DNA (2079bp) protein (693aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] rbh
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R4X7_PSEAI rbh
Superfamily II DNA helicase {ECO:0000313|EMBL:BAO81303.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_1000_bf_scaffold_964_14
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15618..17027
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R776_PSEAI rbh
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake {ECO:0000313|EMBL:BAO81302.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_964_15
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17093..18589
DNA (1497bp) protein (499aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
N-6 DNA methylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBU7_ACISJ rbh
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:BAO81301.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_1000_bf_scaffold_964_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18586..20112
DNA (1527bp) protein (509aa)
N-6 DNA methylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBU6_ACISJ rbh
N-6 DNA methylase rbh
N-6 DNA methylase {ECO:0000313|EMBL:ABM43721.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_964_17
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20105..21277
DNA (1173bp) protein (391aa)
restriction modification system DNA specificity domain-containing protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3] rbh
Restriction modification system DNA specificity domain protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQI8_PSEUP rbh
Restriction modification system DNA specificity domain protein {ECO:0000313|EMBL:AER56991.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_expt_1000_bf_scaffold_964_18
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21274..24267
DNA (2994bp) protein (998aa)
restriction enzyme type I helicase subunits and related helicases (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
DEAD/DEAH box helicase n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4PM01_PSECO rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:ESQ97120.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
SCNpilot_expt_1000_bf_scaffold_964_19
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24280..26490
DNA (2211bp) protein (737aa)
ATPase AAA (EC:3.1.21.-); K07452 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] rbh
AAA ATPase superfamily n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S33_NITEU rbh
GTPase subunit of restriction endonuclease {ECO:0000313|EMBL:BAO81294.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_1000_bf_scaffold_964_20
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26490..27626
DNA (1137bp) protein (379aa)
Possible mcrC protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S32_NITEU rbh
mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC rbh
Possible mcrC protein {ECO:0000313|EMBL:CAD86441.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_964_21
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27935..28633
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S31_NITEU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAD86442.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_964_22
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28648..29142)
DNA (495bp) protein (165aa)
Possible signal peptide n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S30_NITEU rbh
signal peptide rbh
Possible signal peptide {ECO:0000313|EMBL:CAD86443.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_964_23
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29145..29654)
DNA (510bp) protein (170aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Lysozyme n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FM07_STRMK
putative glycosidase
SCNpilot_expt_1000_bf_scaffold_964_24
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29651..29878)
DNA (228bp) protein (76aa)
Uncharacterized protein n=3 Tax=Burkholderiales RepID=F4G840_ALIDK
Uncharacterized protein {ECO:0000313|EMBL:AJY68813.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_964_25
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29875..30177)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R1I7_PSEAI
Membrane protein {ECO:0000313|EMBL:AJY68812.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_964_26
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30243..30593)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R5I7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AJP47356.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_964_27
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30597..31193)
DNA (597bp) protein (199aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T1S8_JANMA rbh
Uncharacterized protein {ECO:0000313|EMBL:AJY68810.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_964_28
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(31193..33466)
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9J4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CBK39903.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_964_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33466..33672)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4ML37_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89927.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_964_30
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(33669..33896)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9J3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK39902.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Displaying items 1-30 of 60 in total

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