ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2109

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2109_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1164
DNA (1164bp) protein (388aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01010}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
23S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000366F57E rbh
SCNpilot_expt_1000_bf_scaffold_2109_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1203..2432
DNA (1230bp) protein (410aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
aspartate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373C037 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_2109_3
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3337..4392
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D90A9 rbh
pan1; multicopper oxidase type 1
Multicopper oxidase type 1 {ECO:0000313|EMBL:CAD84838.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_2109_4
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4408..5100
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372F17E rbh
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:CAD84837.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_2109_5
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5097..5495
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003613C40
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III
Cytochrome c, class IC:Cytochrome c, class I {ECO:0000313|EMBL:CAD84836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_2109_6
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5513..6448
DNA (936bp) protein (312aa)
copper-containing nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] rbh
Putative copper-containing nitrite reductase {ECO:0000313|EMBL:CAL63352.1}; EC=1.7.2.1 {ECO:0000313|EMBL:CAL63352.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
nitrite reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D5783 rbh
SCNpilot_expt_1000_bf_scaffold_2109_7
unknown

Not on your lists

6568..6861
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743EC5
SCNpilot_expt_1000_bf_scaffold_2109_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6964..8280
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D89A1 rbh
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2109_9
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8283..11387
DNA (3105bp) protein (1035aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F2C6 rbh
cusA; RND family outer membrane copper/silver/drug transport protein rbh
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_1000_bf_scaffold_2109_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11384..12745)
DNA (1362bp) protein (454aa)
Fis family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C84EC rbh
Fis family transcriptional regulator rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:BAN34299.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_2109_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12987..13955
DNA (969bp) protein (323aa)
peptide chain release factor 3 n=1 Tax=Thiobacillus denitrificans RepID=UPI000376929E
prfC; peptide chain release factor 3; K02837 peptide chain release factor 3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 11 items

View Taxonomy