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SCNpilot_expt_1000_bf_scaffold_1022

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1022_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..377
DNA (375bp) protein (125aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
histidinol-phosphate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CD7CB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

407..994
DNA (588bp) protein (196aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
imidazoleglycerol-phosphate dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036214DD rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1056..1724
DNA (669bp) protein (223aa)
imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-); K02501 glutamine amidotransferase [EC:2.4.2.-]
imidazole glycerol phosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365AD11 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1756..2511
DNA (756bp) protein (252aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] rbh
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B3FE8 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2527..3282
DNA (756bp) protein (252aa)
imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-); K02500 cyclase [EC:4.1.3.-]
imidazole glycerol phosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A2256 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3279..3680
DNA (402bp) protein (134aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
phosphoribosyl-AMP cyclohydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003781965
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3677..3994
DNA (318bp) protein (106aa)
hisE; phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
Phosphoribosyl-ATP pyrophosphatase id=1353643 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3987..4325
DNA (339bp) protein (113aa)
HIT family hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E5497
HIT family protein; K02503 Hit-like protein involved in cell-cycle regulation
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4344..4559
DNA (216bp) protein (72aa)
preprotein translocase subunit TatA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E8E44
tatA; twin arginine translocase protein A; K03116 sec-independent protein translocase protein TatA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4639..5121
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003710098
twin-arginine translocation protein TatB; K03117 sec-independent protein translocase protein TatB
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5118..5987
DNA (870bp) protein (290aa)
twin-arginine protein translocation system subunit TatC n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BF226 rbh
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_12
unknown

Not on your lists

6073..6207
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1022_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6204..7478)
DNA (1275bp) protein (425aa)
Serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378447A rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7492..8235)
DNA (744bp) protein (248aa)
short-chain dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000382E868 rbh
oxidoreductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8232..9503)
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362AD45 rbh
putative squalene/phytoene dehydrogenase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9500..10345)
DNA (846bp) protein (282aa)
farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21); K02291 phytoene synthase [EC:2.5.1.32]
phytoene synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003657E8B rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10347..11153)
DNA (807bp) protein (269aa)
putative phytoene synthase-like protein id=12493535 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative phytoene synthase-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11400..12683
DNA (1284bp) protein (428aa)
trigger factor n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F381 rbh
trigger factor; K03545 trigger factor rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1022_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12683..13339
DNA (657bp) protein (219aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
Clp protease proteolytic subunit ClpP n=1 Tax=Thiobacillus denitrificans RepID=UPI00037455E4 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13353..14624
DNA (1272bp) protein (424aa)
ATP-dependent protease n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CAA7B rbh
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1022_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14744..17158
DNA (2415bp) protein (805aa)
Lon-A peptidase (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] rbh
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C72A8 rbh
SCNpilot_expt_1000_bf_scaffold_1022_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17307..17579
DNA (273bp) protein (91aa)
Histone-like DNA-binding protein id=1371475 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17995..19896
DNA (1902bp) protein (634aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] rbh
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361B2AB rbh
SCNpilot_expt_1000_bf_scaffold_1022_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19963..20745)
DNA (783bp) protein (261aa)
enoyl-(acyl carrier protein) reductase (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] id=1371472 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20821..22983
DNA (2163bp) protein (721aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C18C8 rbh
oligopeptide ABC transporter periplasmic protein rbh
Oligopeptide ABC transporter periplasmic component {ECO:0000313|EMBL:AAZ97624.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1022_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22983..23960
DNA (978bp) protein (326aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000377B46D rbh
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
Oligopeptide ABC transporter permease protein {ECO:0000313|EMBL:AAZ97623.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1022_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23957..25363
DNA (1407bp) protein (469aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000364E051 rbh
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25360..27414
DNA (2055bp) protein (685aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C9023 rbh
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1022_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27399..27608
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C5363
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1022_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27646..29220)
DNA (1575bp) protein (525aa)
peptidoglycan-binding protein LysM; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D6E57 rbh
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 65 in total

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