ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1065

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1065_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..279)
DNA (279bp) protein (93aa)
narH; nitrate reductase 1, Fe-S (beta) subunit (EC:1.7.99.4); K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
nitrate reductase A subunit beta n=1 Tax=Thiobacillus denitrificans RepID=UPI0003686CB1
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1065_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(398..1720)
DNA (1323bp) protein (441aa)
narK3; MFS-type, NNP family nitrate/nitrite transporter; K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4]
Nitrate reductase 1, alpha chain id=1329777 bin=GWE1_T_denit_62_9 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1065_3

Not on your lists

comp(1696..2580)
DNA (885bp) protein (295aa)
Putative dissimilatory membrane-bound nitrate reductase (Fragment) n=1 Tax=uncultured bacterium RepID=C9YSM6_9BACT
Putative dissimilatory membrane-bound nitrate reductase {ECO:0000313|EMBL:CBG27922.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1065_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2614..4068)
DNA (1455bp) protein (485aa)
narG; nitrate reductase 1, subunit alpha (EC:1.7.99.4); K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4]
nitrate reductase A subunit alpha n=1 Tax=Thiobacillus denitrificans RepID=UPI0003787A5D
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1065_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4190..5800)
DNA (1611bp) protein (537aa)
Nitrate/nitrite antiporter id=1329778 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
nitrate/nitrite antiporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1065_6
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5830..7086)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036406D5 rbh
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
Proton/nitrate symporter {ECO:0000313|EMBL:ABB30576.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
SCNpilot_expt_1000_bf_scaffold_1065_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7473..7895
DNA (423bp) protein (141aa)
cytochrome C n=1 Tax=Thiobacillus denitrificans RepID=UPI000379FC37
putative cytochrome c-type protein
Putative cytochrome c-type protein {ECO:0000313|EMBL:AAZ97351.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7992..8594)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F405F rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1065_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8594..8959)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D1759
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8956..9228)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003724C63
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1065_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9234..9755)
DNA (522bp) protein (174aa)
NosL n=1 Tax=Thiobacillus denitrificans RepID=UPI0003738E3B rbh
putative nitrous oxide reduction lipoprotein
Putative lipoprotein involved in nitrous oxide reduction {ECO:0000313|EMBL:AAZ97347.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9752..10567)
DNA (816bp) protein (272aa)
ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C2DED rbh
ABC transporter transmembrane protein; K01992 ABC-2 type transport system permease protein rbh
ABC transporter transmembrane protein {ECO:0000313|EMBL:AAZ97346.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10578..11534)
DNA (957bp) protein (319aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360653D rbh
ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein rbh
ABC transporter ATPase {ECO:0000313|EMBL:AAZ97345.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11506..12789)
DNA (1284bp) protein (428aa)
copper ABC transporter substrate-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371C25B rbh
nitrous oxidase accessory protein; K07218 nitrous oxidase accessory protein rbh
Nitrous oxidase accessory protein {ECO:0000313|EMBL:AAZ97344.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12777..15434)
DNA (2658bp) protein (886aa)
FMN-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366CE6A rbh
transmembrane regulatory NosR transcription regulator protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15583..17517)
DNA (1935bp) protein (645aa)
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:AAZ97342.1}; EC=1.7.2.4 {ECO:0000313|EMBL:AAZ97342.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
nitrous-oxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF8D8 rbh
SCNpilot_expt_1000_bf_scaffold_1065_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17876..19762
DNA (1887bp) protein (629aa)
periplasmic sensor signal transduction histidine kinase; K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365FDE7 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19769..20428
DNA (660bp) protein (220aa)
LuxR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000378A5AA rbh
transcriptional regulator NarL; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL rbh
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ97352.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20483..21487)
DNA (1005bp) protein (335aa)
hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE id=12495168 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21495..23717)
DNA (2223bp) protein (741aa)
hydrogenase maturation protein HypF n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D68C2 rbh
hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF rbh
Hydrogenase maturation protein HypF {ECO:0000313|EMBL:AAZ97338.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23710..24558)
DNA (849bp) protein (283aa)
hydrogenase assembly protein HupF n=1 Tax=Thiobacillus denitrificans RepID=UPI000363C318
hydrogenase expression/formation protein HypD; K04654 hydrogenase expression/formation protein HypD
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:AAZ97337.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24534..24779)
DNA (246bp) protein (82aa)
hydrogenase assembly protein HupF n=1 Tax=Thiobacillus denitrificans RepID=UPI000363C318
hydrogenase expression/formation protein HypD; K04654 hydrogenase expression/formation protein HypD
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:AAZ97337.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24779..25585)
DNA (807bp) protein (269aa)
hydrogenase nickel incorporation protein HypB n=1 Tax=Thiobacillus denitrificans RepID=UPI0003644EDF rbh
hydrogenase accessory protein HypB; K04652 hydrogenase nickel incorporation protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:AAZ97336.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1065_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25578..25964)
DNA (387bp) protein (129aa)
hydrogenase expression/formation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF id=12493980 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hydrogenase expression/formation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25957..26118)
DNA (162bp) protein (54aa)
hydrogenase assembly protein HypC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003697EE7
hydrogenase expression/formation protein HupF/HypC; K04653 hydrogenase expression/formation protein HypC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26326..26778
DNA (453bp) protein (151aa)
peptidase M52, hydrogen uptake protein; K03605 hydrogenase 1 maturation protease [EC:3.4.24.-]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FF2DD
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1065_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26768..27184
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003650BE4
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1065_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27229..28206
DNA (978bp) protein (326aa)
Ni-Fe hydrogenase, small subunit (EC:1.12.99.6); K06282 hydrogenase small subunit [EC:1.12.99.6]
Ni/Fe hydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003725572
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1065_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28283..28942
DNA (660bp) protein (220aa)
Putative uncharacterized protein id=1337330 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1065_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28939..30201
DNA (1263bp) protein (421aa)
heterodisulfide reductase n=1 Tax=Thiobacillus thioparus RepID=UPI000363E139
heterodisulfide reductase
Heterodisulfide reductase {ECO:0000313|EMBL:AAZ97329.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 31 in total

View Taxonomy