ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1129

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1129_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..896)
DNA (894bp) protein (298aa)
putative FAD-dependent dehydrogenase; K07137 id=12494572 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative FAD-dependent dehydrogenase; K07137
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1129_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1156..2424)
DNA (1269bp) protein (423aa)
putative transmembrane protein; K07007 id=12494573 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative transmembrane protein; K07007 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1129_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2487..2786)
DNA (300bp) protein (100aa)
Plasmid stabilization system n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AA27_9PROT
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:BAN35130.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_1129_4
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2783..3055)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AGI8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDH46507.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1129_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3195..4253)
DNA (1059bp) protein (353aa)
glycosyl transferase family 4; K02851 UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33]
Glycosyl transferase family 4 n=1 Tax=Thauera aminoaromatica S2 RepID=N6Z6G9_9RHOO
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_1129_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4575..4874)
DNA (300bp) protein (100aa)
Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYC6_THIK1
histone family protein nucleoid-structuring protein H-NS; K03746 DNA-binding protein H-NS
Histone family protein nucleoid-structuring protein H-NS {ECO:0000313|EMBL:ADG30234.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
SCNpilot_expt_1000_bf_scaffold_1129_7
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4948..5697)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-J06 RepID=UPI00035E8E96 rbh
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_1000_bf_scaffold_1129_8
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5705..6601)
DNA (897bp) protein (299aa)
group 1 glycosyl transferase; K13001 mannosyltransferase [EC:2.4.1.-]
Glycosyl transferase group 1 n=1 Tax=Geobacter sp. (strain M21) RepID=C6E0K9_GEOSM
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACT18633.1}; TaxID=443144 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
SCNpilot_expt_1000_bf_scaffold_1129_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6804..8015)
DNA (1212bp) protein (404aa)
Wzy n=1 Tax=Escherichia coli RepID=E5FGD1_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KHI93205.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1129_10
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8012..8836)
DNA (825bp) protein (275aa)
Glycosyl transferase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3CZ43_9BURK
Glycosyl transferase {ECO:0000313|EMBL:EJL81444.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
family 2 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_1129_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8934..10154)
DNA (1221bp) protein (407aa)
Putative glycosyltransferase ypjH id=1295756 bin=GWE1_T_denit_62_9 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
group 1 glycosyl transferase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1129_12
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10151..10891)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B50C78
TPR domain-containing protein
TPR domain protein {ECO:0000313|EMBL:ABW26274.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
SCNpilot_expt_1000_bf_scaffold_1129_13
Marinobacter sp. EN3, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10962..11594)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI000308517C rbh
Uncharacterized protein {ECO:0000313|EMBL:ERS11286.1}; TaxID=1397533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. EN3.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_1129_14
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11598..12749)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI000370B3C9 rbh
polysaccharide biosynthesis protein rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ADC72061.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
SCNpilot_expt_1000_bf_scaffold_1129_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12983..13660)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035CC46A
EpsI family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1129_16
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13677..14864)
DNA (1188bp) protein (396aa)
Lipopolysaccharide biosynthesis n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z35_RHOFD rbh
lipopolysaccharide biosynthesis rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_1129_17
unknown

Not on your lists

comp(14861..14962)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1129_18
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14974..17274)
DNA (2301bp) protein (767aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000362AD0D rbh
polysaccharide export protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_1000_bf_scaffold_1129_19
Prochlorococcus marinus, Prochlorococcus, Prochlorales, Cyanobacteria, Bacteria

Not on your lists

comp(17478..19016)
DNA (1539bp) protein (513aa)
Putative uncharacterized protein n=1 Tax=Prochlorococcus marinus (strain MIT 9312) RepID=Q31AA2_PROM9 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB50193.1}; TaxID=74546 species="Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.;" source="Prochlorococcus marinus (strain MIT 9312).;"
SCNpilot_expt_1000_bf_scaffold_1129_20
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19016..19747)
DNA (732bp) protein (244aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
ispU; UDP pyrophosphate synthetase (di-trans, poly-cis-decaprenylcistransferase) (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
UDP diphosphate synthase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QSF7_9BURK
SCNpilot_expt_1000_bf_scaffold_1129_21
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20172..20291)
DNA (120bp) protein (40aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AA23_9PROT
Tax=CG_Beta_01
Displaying 21 items

View Taxonomy