ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1164

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1164_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..571)
DNA (570bp) protein (190aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Thiobacillus denitrificans RepID=UPI000375EDB7
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(643..2118)
DNA (1476bp) protein (492aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
glutamyl-tRNA amidotransferase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI000365314F rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2122..2409)
DNA (288bp) protein (96aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit C n=1 Tax=Thiobacillus thioparus RepID=UPI00037C27B8
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2510..3553
DNA (1044bp) protein (348aa)
rod shape-determining protein MreB n=1 Tax=Thiobacillus denitrificans RepID=UPI0003698581 rbh
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins
Cell shape determining protein MreB/Mrl {ECO:0000313|EMBL:AAZ96213.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1164_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3586..4431
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003734A71 rbh
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1164_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4428..4928
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037275D8 rbh
hypothetical protein; K03571 rod shape-determining protein MreD
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4984..6876
DNA (1893bp) protein (631aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 rbh
penicillin-binding protein 2 n=1 Tax=Thiobacillus denitrificans RepID=UPI000361CE6D rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6863..7963
DNA (1101bp) protein (367aa)
cell wall shape-determining protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E4145 rbh
rod shape-determining protein RodA; K05837 rod shape determining protein RodA rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1164_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7981..8811
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003687C9B rbh
rare lipoprotein A; K03642 rare lipoprotein A rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8825..9940
DNA (1116bp) protein (372aa)
serine-type D-ala-D-ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] rbh
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378349A rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9937..10785
DNA (849bp) protein (283aa)
D-alanine transminase (EC:2.6.1.21); K00824 D-alanine transaminase [EC:2.6.1.21] rbh
cytochrome C550 n=1 Tax=Thiobacillus denitrificans RepID=UPI000382CF4D rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10782..11690
DNA (909bp) protein (303aa)
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
lipoate-protein ligase B n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EB0A9 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1164_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11694..12248)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003782B8A rbh
thioredoxin family protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12235..12798)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AF101 rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1164_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12848..13774
DNA (927bp) protein (309aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
lipoyl synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F7408 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13775..14560)
DNA (786bp) protein (262aa)
nodulation protein NodJ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037937E3 rbh
ABC-2 type transporter, NodJ; K09694 lipooligosaccharide transport system permease protein rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1164_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14565..15470)
DNA (906bp) protein (302aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003810FE8 rbh
ABC-2 type transporter ATPase; K09695 lipooligosaccharide transport system ATP-binding protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15464..16066)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003733A20 rbh
hypothetical protein; K07018
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1164_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16090..16407)
DNA (318bp) protein (106aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI000381B45B
putative ferredoxin 2fe-2s protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16400..16780)
DNA (381bp) protein (127aa)
hypothetical protein id=12494180 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16992..17615
DNA (624bp) protein (208aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B8071 rbh
polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17669..19204
DNA (1536bp) protein (512aa)
chain-length determining protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037224E8 rbh
polysaccharide chain length determinant protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19213..20157
DNA (945bp) protein (315aa)
Protein-tyrosine kinase id=1316214 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
protein-tyrosine kinase rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20138..21715
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003640E99
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1164_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21797..22828
DNA (1032bp) protein (344aa)
ATPase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EB907 rbh
ATPase rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22837..23940
DNA (1104bp) protein (368aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373D4D9 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24162..24794
DNA (633bp) protein (211aa)
polysaccharide deacetylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000379BE8D
polysaccharide deacetylase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24818..25861
DNA (1044bp) protein (348aa)
peptidoglycan bridge formation protein FemAB n=1 Tax=Thiobacillus denitrificans RepID=UPI000371F280 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1164_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25865..27085
DNA (1221bp) protein (407aa)
sugar transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003755B17 rbh
group 1 glycosyl transferase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1164_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27082..28629
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037953F9 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 32 in total

View Taxonomy