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SCNpilot_expt_1000_bf_scaffold_1175

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1175_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..751)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000368BCD2
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ADJ22546.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1175_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(859..1161)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F0C92
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ22547.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1175_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1173..1451)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B461B
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1655..1837)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375C7FF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1980..2309)
DNA (330bp) protein (110aa)
aldehyde-activating protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BE4E0
formaldehyde-activating enzyme
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2309..2497)
DNA (189bp) protein (63aa)
aldehyde-activating protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BE4E0
formaldehyde-activating enzyme
Formaldehyde-activating enzyme {ECO:0000313|EMBL:ADJ23678.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1175_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2604..3800)
DNA (1197bp) protein (399aa)
SCO1/SenC family protein/methylamine utilization protein MauG id=12498378 bin=THIO_MID species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3797..4573)
DNA (777bp) protein (259aa)
SCO1/SenC family protein/methylamine utilization protein MauG id=12498377 bin=THIO_MID species=Methylobacter marinus genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4590..5978)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DFFC4 rbh
selenium-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_10
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6399..6839
DNA (441bp) protein (147aa)
NADH dehydrogenase I subunit E; K00127 formate dehydrogenase, gamma subunit id=12498375 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
NAD-dependent formate dehydrogenase gamma subunit {ECO:0000313|EMBL:EPX75615.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
NADH dehydrogenase (ubiquinone) 24 kda subunit; K00127 formate dehydrogenase, gamma subunit
SCNpilot_expt_1000_bf_scaffold_1175_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6836..8398
DNA (1563bp) protein (521aa)
fdsB; NAD-dependent formate dehydrogenase subunit beta (EC:1.2.1.2); K00124 formate dehydrogenase, beta subunit
NADH dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C2161
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_12
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8395..11256
DNA (2862bp) protein (954aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=12498373 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
yjgC; putative oxidoreductase YjgC (EC:1.-.-.-)
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:ERI52606.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
SCNpilot_expt_1000_bf_scaffold_1175_13
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12081..12317
DNA (237bp) protein (79aa)
NAD-dependent formate dehydrogenase subunit delta; K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360FB8C
NAD-dependent formate dehydrogenase subunit delta {ECO:0000313|EMBL:EGI77512.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
SCNpilot_expt_1000_bf_scaffold_1175_14
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12314..12877
DNA (564bp) protein (188aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A442 rbh
Tax=CG_Beta_01
SCNpilot_expt_1000_bf_scaffold_1175_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13063..13812
DNA (750bp) protein (250aa)
group 2 family glycosyl transferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] rbh
dolichol-phosphate mannosyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BE215
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13956..14675
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E44F3 rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1175_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14656..16254
DNA (1599bp) protein (533aa)
putative glycosyltransferase id=12493082 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative glycosyltransferase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1175_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16258..16503)
DNA (246bp) protein (82aa)
RNA-binding protein Hfq n=1 Tax=Thiobacillus RepID=UPI00037A4DDE
RNA-binding protein Hfq; K03666 host factor-I protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16562..17377)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FAF06 rbh
PpiC-type peptidyl-prolyl cis-trans isomerase rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1175_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17389..17652)
DNA (264bp) protein (88aa)
putative stress-induced morphogen BolA; K05527 BolA protein
Putative stress-induced morphogen BolA id=1348886 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Putative stress-induced morphogen BolA {ECO:0000313|EMBL:AAZ97484.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1175_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17649..17951)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381743E
hypothetical protein; K09780 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1175_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17951..18568)
DNA (618bp) protein (206aa)
septation protein A n=1 Tax=Thiobacillus denitrificans RepID=UPI000364B65D rbh
intracellular septation protein A; K06190 intracellular septation protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1175_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18676..19539
DNA (864bp) protein (288aa)
phosphoesterase n=1 Tax=Thiobacillus denitrificans RepID=UPI000362A8A4 rbh
phosphoesterase PHP; K07053
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1175_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19552..20175
DNA (624bp) protein (208aa)
translation factor Sua5 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003601C92 rbh
putative translation factor Sua5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1175_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20182..20886
DNA (705bp) protein (235aa)
peptidase M50 n=1 Tax=Thiobacillus thioparus RepID=UPI0003625CFA
putative integral membrane transmembrane protein
Putative integral membrane transmembrane protein {ECO:0000313|EMBL:AAZ97479.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1175_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20933..22123
DNA (1191bp) protein (397aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
tryptophanyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI000376BAED rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1175_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22143..22571)
DNA (429bp) protein (143aa)
peptide chain release factor I n=1 Tax=Thiobacillus denitrificans RepID=UPI0003755B45
hypothetical protein; K15034 ribosome-associated protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97476.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1175_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22588..23430)
DNA (843bp) protein (281aa)
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
glutamate racemase n=1 Tax=Thiobacillus denitrificans RepID=UPI000380F024
SCNpilot_expt_1000_bf_scaffold_1175_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23436..24050
DNA (615bp) protein (205aa)
cobalt transporter n=1 Tax=Thiobacillus thioparus RepID=UPI0003743D2B
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1175_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24081..24539)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364E20C
4Fe-4S ferredoxin protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 30 items

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