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SCNpilot_expt_1000_bf_scaffold_1207

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1207_1
Pseudomonas sp. CMAA1215, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(259..402)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZVQ7_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ERO63247.1}; TaxID=1387231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CMAA1215.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1207_2
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(579..1217)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P843_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI06518.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_1207_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2272..2538
DNA (267bp) protein (89aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AD0C6
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1207_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2661..3200
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000374F92C rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1207_5
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3994..6999)
DNA (3006bp) protein (1002aa)
Putative uncharacterized protein n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DFK3_9GAMM
Putative signaling protein {ECO:0000313|EMBL:EGV50592.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1207_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7111..7503)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FE466
putative hydrolase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1207_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7700..8335
DNA (636bp) protein (212aa)
phosphoribosyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E408F rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1207_8
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8468..9508)
DNA (1041bp) protein (347aa)
Putative beta-lactamase {ECO:0000313|EMBL:CCQ72133.1}; EC=3.5.2.6 {ECO:0000313|EMBL:CCQ72133.1};; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C492A rbh
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_1207_9
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9523..10071)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A96F4 rbh
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ACT46962.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
SCNpilot_expt_1000_bf_scaffold_1207_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10134..11150
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361EA4B rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EIK90067.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1207_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11239..12429)
DNA (1191bp) protein (397aa)
secretion protein HlyD n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F3972 rbh
secretion protein HlyD; K02005 HlyD family secretion protein rbh
Secretion protein HlyD {ECO:0000313|EMBL:AAZ97534.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1207_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12444..14813)
DNA (2370bp) protein (790aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BF8B0 rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1207_13

Not on your lists

comp(14818..17379)
DNA (2562bp) protein (854aa)
magnesium-translocating P-type ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2] rbh
Magnesium-transporting ATPase, P-type 1 (Mg(2+) transport ATPase, P-type 1) {ECO:0000313|EMBL:CBI04411.1}; EC=3.6.3.2 {ECO:0000313|EMBL:CBI04411.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003615068 rbh
SCNpilot_expt_1000_bf_scaffold_1207_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17384..18109)
DNA (726bp) protein (242aa)
ABC transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036639E8 rbh
ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1207_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18435..19091)
DNA (657bp) protein (219aa)
DeoR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037158F6
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1207_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19088..20182)
DNA (1095bp) protein (365aa)
hypothetical protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] rbh
pyruvate formate lyase-activating protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EB0A8 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1207_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20169..21542)
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DD947 rbh
hypothetical protein; K06990 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1207_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21716..23191
DNA (1476bp) protein (492aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370980B rbh
sensor protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1207_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23241..23888
DNA (648bp) protein (216aa)
LuxR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003642AE6 rbh
two component LuxR family transcriptional regulator; K07689 two-component system, NarL family, invasion response regulator UvrY
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1207_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24231..25808
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DA155 rbh
diguanylate cyclase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1207_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26062..27891
DNA (1830bp) protein (610aa)
Flagellin FliC n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SII5_THIDA rbh
flagellin FliC; K02406 flagellin rbh
Flagellin FliC {ECO:0000313|EMBL:AAZ97543.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1207_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27947..28342
DNA (396bp) protein (132aa)
Putative flagellar protein FlaG n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SII4_THIDA
putative flagellar protein FlaG; K06603 flagellar protein FlaG
Putative flagellar protein FlaG {ECO:0000313|EMBL:AAZ97544.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1207_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28354..30351
DNA (1998bp) protein (666aa)
Flagellar hook-associated protein 2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SII3_THIDA rbh
flagellar hook-associated protein 2; K02407 flagellar hook-associated protein 2 rbh
Flagellar hook-associated protein 2 {ECO:0000313|EMBL:AAZ97545.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1207_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30372..30824
DNA (453bp) protein (151aa)
Flagellar protein FliS n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SII2_THIDA
flagellar protein FliS; K02422 flagellar protein FliS
Flagellar protein FliS {ECO:0000313|EMBL:AAZ97546.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1207_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30838..31167
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C9D5B
flagellar protein FliT; K02423 flagellar protein FliT
Flagellar protein FliT {ECO:0000313|EMBL:AAZ97547.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1207_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31180..32184
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380F5AD rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1207_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32171..32458
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037177F5
flagellar protein FhlB; K04061 flagellar biosynthesis protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1207_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32474..33241
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371DA9D rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1207_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33282..34241
DNA (960bp) protein (320aa)
chemotaxis protein CheV n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DD985 rbh
CheW protein; K03415 two-component system, chemotaxis family, response regulator CheV
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1207_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34359..34703)
DNA (345bp) protein (115aa)
flagellar hook-basal body protein FliE n=1 Tax=Thiobacillus denitrificans RepID=UPI000362779C
fliE; flagellar hook-basal body protein FliE; K02408 flagellar hook-basal body complex protein FliE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 34 in total

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