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SCNpilot_expt_1000_bf_scaffold_1221

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1221_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137..1417)
DNA (1281bp) protein (427aa)
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
adenylosuccinate synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B2587
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1432..2397)
DNA (966bp) protein (322aa)
ATP phosphoribosyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036518BB rbh
ATP phosphoribosyltransferase regulatory subunit; K02502 ATP phosphoribosyltransferase regulatory subunit rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2413..2601)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374ED1F
hypothetical protein; K09937 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2598..3479)
DNA (882bp) protein (294aa)
hypothetical protein; K04087 membrane protease subunit HflC [EC:3.4.-.-] rbh
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378A6D4 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3476..4675)
DNA (1200bp) protein (400aa)
HflK; K04088 membrane protease subunit HflK [EC:3.4.-.-] rbh
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003600E2C rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4681..5865)
DNA (1185bp) protein (395aa)
GTP-binding proten HflX n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EDE89 rbh
GTP-binding protein HflX; K03665 GTP-binding protein HflX rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6033..7841)
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365C75F rbh
hypothetical protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7860..8942)
DNA (1083bp) protein (361aa)
galactose-1-phosphate uridyl transferase, class I (EC:2.7.7.10); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
galactose-1-phosphate uridylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003739CB2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9143..9424
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A912C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96553.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1221_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9427..9678
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037490F6
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1221_11
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9644..11641)
DNA (1998bp) protein (666aa)
diguanylate cyclase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003712E6C rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ACR02542.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
SCNpilot_expt_1000_bf_scaffold_1221_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11752..13062)
DNA (1311bp) protein (437aa)
engA, yfgK, yphC; GTP-binding protein EngA; K03977 GTP-binding protein id=12493866 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
engA, yfgK, yphC; GTP-binding protein EngA; K03977 GTP-binding protein
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1221_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13108..14262)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A9027 rbh
pyrrolo-quinoline quinone rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14265..14906)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379670A rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14920..16185)
DNA (1266bp) protein (422aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
histidyl-tRNA synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000362106A rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16208..17428)
DNA (1221bp) protein (407aa)
ispG, gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003713503 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17461..18273)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E52B8 rbh
hypothetical protein; K15539 cytoskeleton protein RodZ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1221_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18270..19040)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7605 rbh
TPR repeat-containing pilus assembly protein PilF; K02656 type IV pilus assembly protein PilF rbh
Putative pilus assembly protein PilF, TPR repeat {ECO:0000313|EMBL:AAZ96545.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1221_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19037..20140)
DNA (1104bp) protein (368aa)
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] rbh
50S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D5F95 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20153..20578)
DNA (426bp) protein (142aa)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
nucleoside diphosphate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BAF29
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_21
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20789..21547
DNA (759bp) protein (253aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B1008 rbh
integral membrane protein TerC rbh
Integral membrane protein TerC {ECO:0000313|EMBL:ABE45570.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_1000_bf_scaffold_1221_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21544..22839)
DNA (1296bp) protein (432aa)
cell cycle protein MesJ; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037898AB rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22853..23821)
DNA (969bp) protein (323aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha id=1357658 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23903..24385)
DNA (483bp) protein (161aa)
fkbp-type peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
peptidylprolyl isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003819DCD rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1221_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24382..24861)
DNA (480bp) protein (160aa)
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
alkyl hydroperoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A1C65 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1221_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24935..26053
DNA (1119bp) protein (373aa)
cupin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CEDFF rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96538.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1221_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26050..26520
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C3A5A rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96537.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1221_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26526..27335)
DNA (810bp) protein (270aa)
anaerobic ribonucleoside triphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003747F3C rbh
hypothetical protein rbh
Putative exported protein {ECO:0000313|EMBL:AAZ96536.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1221_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27317..28390)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FD9FD rbh
hypothetical protein; K11720 lipopolysaccharide export system permease protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1221_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28387..29466)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AD778 rbh
hypothetical protein; K07091 lipopolysaccharide export system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96534.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 31 in total

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