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SCNpilot_expt_1000_bf_scaffold_1294

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1294_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2477
DNA (2475bp) protein (825aa)
dihydroxyacid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase id=1343564 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2565..3170
DNA (606bp) protein (202aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000368B339 rbh
partition-like protein; K03496 chromosome partitioning protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3192..3770)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361D04A rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1294_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3917..5950
DNA (2034bp) protein (678aa)
thioredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E59AB rbh
hypothetical protein; K06888 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6034..6831
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378AD17 rbh
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6966..7286
DNA (321bp) protein (107aa)
cytochrome C n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645F72
cytochrome c transmembrane protein
Probable cytochrome C transmembrane protein {ECO:0000313|EMBL:AAZ98679.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1294_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7428..8945
DNA (1518bp) protein (506aa)
alanine glycine permease n=1 Tax=Thiobacillus denitrificans RepID=UPI0003794EF0 rbh
sodium:alanine symporter; K03310 alanine or glycine:cation symporter, AGCS family rbh
Sodium:alanine symporter {ECO:0000313|EMBL:AAZ98678.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1294_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8968..9558)
DNA (591bp) protein (197aa)
5-formyltetrahydrofolate cyclo-ligase family protein; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] rbh
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003643B46 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9762..10064)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EA28F
cell division protein ZapA; K09888 cell division protein ZapA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1294_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10064..10261)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E038D
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10629..12644
DNA (2016bp) protein (672aa)
outer membrane cobalamin receptor protein; K02014 iron complex outermembrane recepter protein id=12495041 bin=THIO_HI species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
outer membrane cobalamin receptor protein; K02014 iron complex outermembrane recepter protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1294_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12716..13354
DNA (639bp) protein (213aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17); K00798 cob(I)alamin adenosyltransferase [EC:2.5.1.17]
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP id=1354787 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1294_13
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13447..14265
DNA (819bp) protein (273aa)
mechanosensitive ion channel family protein; K03442 small conductance mechanosensitive channel id=12496189 bin=THIO_MID species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
mechanosensitive ion channel protein MscS; K03442 small conductance mechanosensitive channel rbh
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABK99231.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_1000_bf_scaffold_1294_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14262..15188
DNA (927bp) protein (309aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] rbh
glutamyl-Q tRNA(Asp) ligase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003658CF4 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15232..15786
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A91D1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ98661.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1294_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16021..17064
DNA (1044bp) protein (348aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA id=12498675 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1294_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17084..17341
DNA (258bp) protein (86aa)
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B3C5B
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17338..18294
DNA (957bp) protein (319aa)
phosphate starvation protein PhoH n=1 Tax=Thiobacillus denitrificans RepID=UPI0003704840 rbh
PhoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1294_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18281..18733
DNA (453bp) protein (151aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
heat-shock protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003827700
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_expt_1000_bf_scaffold_1294_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18746..19606
DNA (861bp) protein (287aa)
cation transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000364BB9D rbh
hypothetical protein; K06189 magnesium and cobalt transporter rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1294_21
Pseudomonas syringae group genomosp. 3, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19898..20422)
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas syringae pv. tomato T1 RepID=E2MHS0_PSEUB
Uncharacterized protein {ECO:0000313|EMBL:KGK93640.1}; TaxID=323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae pv. tomato.;"
SCNpilot_expt_1000_bf_scaffold_1294_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21314..22456)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DE689 rbh
hypothetical protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22531..23271
DNA (741bp) protein (247aa)
pteridine reductase; K03793 pteridine reductase [EC:1.5.1.33]
pteridine reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B391D rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23479..24096)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000376F1D7 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1294_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24378..25790)
DNA (1413bp) protein (471aa)
EmrB/QacA subfamily drug resistance transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A4396 rbh
major facilitator superfamily drug efflux transporter
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26174..26629
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368A276
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97468.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1294_27
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26716..27105)
DNA (390bp) protein (130aa)
hypothetical protein id=12493404 bin=THIO_HI species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein family UPF0150 {ECO:0000313|EMBL:AEJ01300.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_1000_bf_scaffold_1294_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27366..27893)
DNA (528bp) protein (176aa)
nucleoside-diphosphate-sugar epimerase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] id=12496202 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
nucleoside-diphosphate-sugar epimerase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27893..28354)
DNA (462bp) protein (154aa)
nucleoside-diphosphate-sugar epimerase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
Nucleoside-diphosphate-sugar epimerase id=1304150 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1294_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28410..29690
DNA (1281bp) protein (427aa)
3-deoxy-D-manno-octulosonic-acid transferase transmembrane protein; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] rbh
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000382BFEA rbh
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 39 in total

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