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SCNpilot_expt_1000_bf_scaffold_1529

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1529_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..488
DNA (486bp) protein (162aa)
RNA polymerase sigma factor RpoD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGA9_THIDA
carbamoyl-phosphate synthase L chain, ATP-binding; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1529_2
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

880..1380
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381D4D8
hypothetical protein
Tax=CG_Hydro_01
SCNpilot_expt_1000_bf_scaffold_1529_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1714..2298
DNA (585bp) protein (195aa)
dihydroorotate oxidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037201D8 rbh
slmA, ttk; nucleoid occlusion protein; K05501 TetR/AcrR family transcriptional regulator rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2286..3056)
DNA (771bp) protein (257aa)
molybdopterin biosynthesis protein MoeB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FCE1C rbh
adenylyltransferase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1529_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3071..3466)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000382D715
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3551..4957)
DNA (1407bp) protein (469aa)
peptidase S41A, protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] rbh
peptidase S41 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BD57E rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1529_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4959..6209)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037617E1 rbh
M23 family peptidase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6239..7780)
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] rbh
phosphoglyceromutase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DFE07 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7950..8273
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator id=12493240 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1529_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8506..9546
DNA (1041bp) protein (347aa)
RND transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000375DF06 rbh
secretion protein HlyD rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9559..12780
DNA (3222bp) protein (1074aa)
multidrug transporter AcrB n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A15F rbh
acriflavin resistance protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12770..12988
DNA (219bp) protein (73aa)
sulfurtransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA446
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1529_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13001..13417
DNA (417bp) protein (139aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003637DEF
rhodanese-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1529_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13427..13690
DNA (264bp) protein (88aa)
glutaredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F6436
glutaredoxin, GrxC; K03676 glutaredoxin 3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1529_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13760..14188
DNA (429bp) protein (143aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8]
thioredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D8A71
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14253..14768
DNA (516bp) protein (172aa)
preprotein translocase subunit SecB n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CEAD1
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1529_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15141..16127
DNA (987bp) protein (329aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] rbh
glycerol-3-phosphate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003601BC5 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1529_18
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16187..17590)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DDAC1 rbh
virulence factor family protein rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_1529_19
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17602..20196)
DNA (2595bp) protein (865aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7F66 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGA92223.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
SCNpilot_expt_1000_bf_scaffold_1529_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20305..21507)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ05_THIDA rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ97365.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1529_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21507..22211)
DNA (705bp) protein (235aa)
ABC transporter related id=1319185 bin=GWE1_T_denit_62_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
ABC transporter; K02003 putative ABC transport system ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_22
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22208..23503)
DNA (1296bp) protein (432aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M672_GEODF rbh
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein rbh
Efflux pump, RND family, membrane fusion protein {ECO:0000313|EMBL:ACM21860.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
SCNpilot_expt_1000_bf_scaffold_1529_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23500..24993)
DNA (1494bp) protein (498aa)
RND transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036886CF rbh
NodT family RND efflux system outer membrane lipoprotein rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1529_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25106..26056
DNA (951bp) protein (317aa)
cytochrome C biogenesis protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003758715 rbh
heat shock protein DnaJ domain-containing protein; K05516 curved DNA-binding protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1529_25
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26060..26362
DNA (303bp) protein (101aa)
MerR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D2063
Uncharacterized protein {ECO:0000313|EMBL:EXI68650.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
transcriptional regulatory protein, MerR family
SCNpilot_expt_1000_bf_scaffold_1529_26
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26440..26859
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037892C3
Maebl {ECO:0000313|EMBL:CDY77117.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein
Displaying 26 items

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