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SCNpilot_expt_1000_bf_scaffold_1585

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1585_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..916)
DNA (915bp) protein (305aa)
Two Component Transcriptional Regulator, Fis family id=1368442 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
two component Fis family transcriptional regulator
Two Component Transcriptional Regulator, Fis family {ECO:0000313|EMBL:AAZ96504.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1107..1562)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CE460
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1585_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2886..5504)
DNA (2619bp) protein (873aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] rbh
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Alanine--tRNA ligase n=2 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYA_THIDA rbh
SCNpilot_expt_1000_bf_scaffold_1585_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5595..6143
DNA (549bp) protein (183aa)
lipoprotein signal peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI000368F210 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1585_5
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6200..6457)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DE153
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_1585_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6480..8318)
DNA (1839bp) protein (613aa)
nitric oxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C65D6 rbh
putative nitric oxide reductase activation protein; K02448 nitric oxide reductase NorD protein rbh
Putative nitric oxide reductase activation protein {ECO:0000313|EMBL:AAZ96508.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8321..9361)
DNA (1041bp) protein (347aa)
(Fe-S)-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A9992 rbh
iron-sulfur cluster-binding protein rbh
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:AAZ96509.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9355..9735)
DNA (381bp) protein (127aa)
cytochrome C oxidase subunit III n=1 Tax=Thiobacillus denitrificans RepID=UPI000378CA3C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96510.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9740..10555)
DNA (816bp) protein (272aa)
ATPase AAA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D9057 rbh
putative nitric oxide reductase activation protein NorQ; K04748 nitric oxide reductase NorQ protein rbh
Putative nitric oxide reductase activation protein NorQ {ECO:0000313|EMBL:AAZ96511.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_10
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10568..10825)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377933A
Uncharacterized protein {ECO:0000313|EMBL:KIF81944.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1585_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10828..11355)
DNA (528bp) protein (176aa)
cytochrome C oxidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FAAC2 rbh
putative nitric oxide reductase (Nor) complex membrane protein; K02164 nitric oxide reductase NorE protein
Putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein {ECO:0000313|EMBL:AAZ96513.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11468..12847)
DNA (1380bp) protein (460aa)
nitric-oxide reductase subunit B; K04561 nitric oxide reductase subunit B [EC:1.7.2.5] rbh
nitric oxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003757A77 rbh
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:AAZ96514.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1585_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12886..13311)
DNA (426bp) protein (142aa)
nitric-oxide reductase subunit C (EC:1.7.99.7); K02305 nitric oxide reductase subunit C
Nitric-oxide reductase subunit C {ECO:0000313|EMBL:AAZ96515.1}; EC=1.7.2.5 {ECO:0000313|EMBL:AAZ96515.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
cytochrome C n=1 Tax=Thiobacillus denitrificans RepID=UPI000379EF2D
SCNpilot_expt_1000_bf_scaffold_1585_14
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13696..14118)
DNA (423bp) protein (141aa)
5''''-nucleotidase n=1 Tax=Thiobacillus denitrificans RepID=UPI000379A733
sulfate thiol esterase SoxB
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_1000_bf_scaffold_1585_15
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14418..14714
DNA (297bp) protein (99aa)
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
SCNpilot_expt_1000_bf_scaffold_1585_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15575..16420)
DNA (846bp) protein (282aa)
cytochrome SoxA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F807D rbh
diheme cytochrome SoxA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1585_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16842..17294)
DNA (453bp) protein (151aa)
sulfur oxidation protein SoxY n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EF751
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1585_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17323..17688)
DNA (366bp) protein (122aa)
cytochrome CBB3 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003631A3A
monoheme cytochrome SoxX
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1585_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17892..19310)
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F1E2D rbh
M48 family peptidase rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1585_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19387..19884
DNA (498bp) protein (166aa)
molybdenum cofactor biosynthesis protein MoaC n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F9651 rbh
GTP cyclohydrolase subunit MoaC; K03637 molybdenum cofactor biosynthesis protein C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1585_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19947..20648
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A44AF rbh
thiol-disulfide isomerase-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1585_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20645..21163
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E8D3B rbh
thiol-disulfide isomerase-like protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1585_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21431..22774
DNA (1344bp) protein (448aa)
DMSO reductase subunit A; K00183 molybdopterin oxidoreductase, molybdopterin binding subunit [EC:1.2.7.-]
formate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BE463
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 23 items

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