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SCNpilot_expt_1000_bf_scaffold_1764

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1764_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..406)
DNA (405bp) protein (135aa)
nuoL; NADH dehydrogenase I subunit L (EC:1.6.5.3); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit L n=1 Tax=Thiobacillus denitrificans RepID=UPI000363FE78
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1764_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(411..716)
DNA (306bp) protein (102aa)
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3); K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C1342
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1764_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(713..1354)
DNA (642bp) protein (214aa)
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3); K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit J n=1 Tax=Thiobacillus denitrificans RepID=UPI00036036B2 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1764_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1364..1852)
DNA (489bp) protein (163aa)
nuoI; NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] rbh
NADH dehydrogenase subunit I n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6EAE rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1764_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1860..2876)
DNA (1017bp) protein (339aa)
nuoH; NADH dehydrogenase I subunit H (EC:1.6.5.3); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
NADH:ubiquinone oxidoreductase subunit H n=1 Tax=Thiobacillus denitrificans RepID=UPI000378ACD7 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2891..5266)
DNA (2376bp) protein (792aa)
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3] rbh
NADH dehydrogenase subunit G n=1 Tax=Thiobacillus denitrificans RepID=UPI0003807FBB rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5281..6561)
DNA (1281bp) protein (427aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase, chain F {ECO:0000313|EMBL:AAZ97100.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAZ97100.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
NADH dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000371CBDB rbh
SCNpilot_expt_1000_bf_scaffold_1764_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6558..7058)
DNA (501bp) protein (167aa)
nuoE; NADH dehydrogenase subunit E (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH dehydrogenase subunit E n=1 Tax=Thiobacillus denitrificans RepID=UPI0003770C50 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7058..8311)
DNA (1254bp) protein (418aa)
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit D id=1326639 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8311..8910)
DNA (600bp) protein (200aa)
nuoC; NADH dehydrogenase subunit C (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
NADH dehydrogenase subunit C n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6749 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1764_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8920..9396)
DNA (477bp) protein (159aa)
nuoB; NADH dehydrogenase subunit B (EC:1.6.5.3); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
NADH dehydrogenase subunit B n=1 Tax=Thiobacillus denitrificans RepID=UPI00036804EB rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9497..9853)
DNA (357bp) protein (119aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3); K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CFBB6
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1764_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10124..10468)
DNA (345bp) protein (115aa)
preprotein translocase subunit SecG n=1 Tax=Thiobacillus denitrificans RepID=UPI000360C3AD
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
Preprotein translocase SecG subunit {ECO:0000313|EMBL:AAZ97094.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1764_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10481..11227)
DNA (747bp) protein (249aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] rbh
triosephosphate isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D824D rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11313..12095)
DNA (783bp) protein (261aa)
phosphate transport system permease 1; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] rbh
Phosphate import ATP-binding protein PstB {ECO:0000255|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000255|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000255|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000255|HAMAP-Rule:MF_01702}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
phosphate ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364B153 rbh
SCNpilot_expt_1000_bf_scaffold_1764_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12114..12959)
DNA (846bp) protein (282aa)
phosphate transporter permease subunit PtsA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AF53B rbh
phosphate transport system permease 2; K02038 phosphate transport system permease protein
Phosphate transport system permease protein 2 {ECO:0000313|EMBL:AAZ97091.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1764_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12971..13948)
DNA (978bp) protein (326aa)
phosphate transporter permease subunit PstC n=1 Tax=Thiobacillus denitrificans RepID=UPI000371F5E8
phosphate ABC transporter permease PstC; K02037 phosphate transport system permease protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1764_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14075..15094)
DNA (1020bp) protein (340aa)
Periplasmic phosphate binding protein id=1326650 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
periplasmic phosphate binding protein; K02040 phosphate transport system substrate-binding protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1764_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15184..16548)
DNA (1365bp) protein (455aa)
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
phosphoglucosamine mutase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003610DF2 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1764_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16538..17377)
DNA (840bp) protein (280aa)
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] rbh
dihydropteroate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B54A9 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17432..19324)
DNA (1893bp) protein (631aa)
membrane protease FtsH catalytic subunit (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent metalloprotease n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B361B rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19373..20050)
DNA (678bp) protein (226aa)
cell division protein FtsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] rbh
23S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D69F7 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20099..20395
DNA (297bp) protein (99aa)
RNA-binding protein YhbY n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AA623
hypothetical protein; K07574 RNA-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1764_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20413..20871)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378C68D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1764_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20871..21347)
DNA (477bp) protein (159aa)
transcription elongation factor GreA n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D284 rbh
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1764_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21364..23001)
DNA (1638bp) protein (546aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
carbamoyl phosphate synthase large subunit n=1 Tax=Thiobacillus denitrificans RepID=UPI000380E22E
Displaying 26 items

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