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SCNpilot_expt_1000_bf_scaffold_11849

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11849_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..537)
DNA (537bp) protein (179aa)
aconitase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F58A9
Aconitate hydratase 1 {ECO:0000313|EMBL:AAZ96844.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_11849_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(634..984)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D425C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96845.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_11849_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1056..2546)
DNA (1491bp) protein (497aa)
lysyl-tRNA synthetase, class-2; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00252}; EC=6.1.1.6 {ECO:0000255|HAMAP-Rule:MF_00252};; Lysyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00252}; Short=LysRS {ECO:0000255|HAMAP-Rule:MF_00252};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
lysyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003626FF7
SCNpilot_expt_1000_bf_scaffold_11849_4
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2558..2986)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI000360622F
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_1000_bf_scaffold_11849_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2986..3219)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003797F8F
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:AAZ96848.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_11849_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3293..5074
DNA (1782bp) protein (594aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Thiobacillus denitrificans RepID=UPI0003704A35
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AAZ96849.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_11849_7
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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5156..5437
DNA (282bp) protein (94aa)
hypothetical protein id=12494656 bin=THIO_HI species=Acidithiobacillus ferrivorans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_1000_bf_scaffold_11849_8
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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5434..5796
DNA (363bp) protein (121aa)
hypothetical protein id=12494655 bin=THIO_HI species=Burkholderia sp. SJ98 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_1000_bf_scaffold_11849_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5793..6224)
DNA (432bp) protein (144aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID94_XANP2
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ABS65987.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_11849_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6465..7316
DNA (852bp) protein (284aa)
LysR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4ML05_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:EIK89895.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
SCNpilot_expt_1000_bf_scaffold_11849_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7477..10176)
DNA (2700bp) protein (900aa)
pepN; aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2] rbh
Peptidase M, neutral zinc metallopeptidases, zinc-binding site id=1345795 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_11849_12
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10298..11440)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TBU3_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_1000_bf_scaffold_11849_13
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11443..11769)
DNA (327bp) protein (109aa)
SMC domain protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CS01_SIDLE
SMC domain protein
SMC domain protein {ECO:0000313|EMBL:ADE11737.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
Displaying 13 items

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