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SCNpilot_expt_1000_bf_scaffold_3311

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3311_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..537
DNA (537bp) protein (179aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88]
LexA repressor id=1324497 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3311_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

627..1277
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FA78E rbh
McbC-like oxidoreductase for polypeptide thioester cyclization
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3311_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1459..1989
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E6C64
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3311_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2117..2734)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C985B rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3311_5
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2846..4006)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361E8C9 rbh
Hydrogenase (NiFe) small subunit HydA {ECO:0000313|EMBL:EIJ36041.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hydrogenase (NiFe) small subunit HydA
SCNpilot_expt_1000_bf_scaffold_3311_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4121..4660)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003821AC0 rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3311_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4657..5571)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037152EB rbh
ErfK/YbiS/YcfS/YnhG family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3311_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5622..5969)
DNA (348bp) protein (116aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BCF46
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3311_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5969..6742)
DNA (774bp) protein (258aa)
peptidase M48 Ste24p n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D16D2 rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3311_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6792..7148)
DNA (357bp) protein (119aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000255|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811}; Short=THDP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811};; Short=THP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811};; Short=Tetrahydropicolinate succinylase {ECO:0000255|HAMAP-Rule:MF_00811};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydro
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=DAPD_THIDA
SCNpilot_expt_1000_bf_scaffold_3311_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7625..8839)
DNA (1215bp) protein (405aa)
succinyldiaminopimelate transaminase (EC:2.6.1.11); K14267 N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
succinyldiaminopimelate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003744CAF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3311_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8881..9783
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363BA38 rbh
integral membrane protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3311_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9776..10153
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376C7DF
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3311_14
unknown

Not on your lists

comp(10192..10407)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3311_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10621..11892)
DNA (1272bp) protein (424aa)
sugar kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003616A39
FGGY family sugar kinase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3311_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11897..12316)
DNA (420bp) protein (140aa)
7-cyano-7-deazaguanine reductase; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00035CBE46
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3311_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12405..15806
DNA (3402bp) protein (1134aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003669B66 rbh
condensin subunit Smc; K03529 chromosome segregation protein rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 17 items

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