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SCNpilot_expt_1000_bf_scaffold_5452

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5452_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..2061
DNA (2061bp) protein (687aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000255|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00049}; Short=LeuRS {ECO:0000255|HAMAP-Rule:MF_00049};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Leucine--tRNA ligase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYL_THIDA
SCNpilot_expt_1000_bf_scaffold_5452_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2161..2661
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035ECCBB
putative lipoprotein B transmembrane; K03643 LPS-assembly lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_5452_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2658..3686
DNA (1029bp) protein (343aa)
DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7] rbh
DNA polymerase III, delta subunit id=1320908 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_5452_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3683..4393
DNA (711bp) protein (237aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
gamma-glutamyl phosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036924DC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_5452_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4368..4946
DNA (579bp) protein (193aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
gamma-glutamyl phosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036924DC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_5452_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4951..5598
DNA (648bp) protein (216aa)
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
nicotinic acid mononucleotide adenylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C9FE7 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_5452_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5595..5954
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371974F
Iojap-like protein; K09710 ribosome-associated protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_5452_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5955..6425
DNA (471bp) protein (157aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
50S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00038169E6 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_5452_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6443..7054
DNA (612bp) protein (204aa)
septum formation inhibitor Maf n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C9B3C rbh
maf; Maf-like protein; K06287 septum formation protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_5452_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7075..8526
DNA (1452bp) protein (484aa)
RNAse G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-] rbh
ribonuclease G n=1 Tax=Thiobacillus denitrificans RepID=UPI0003754AC8 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_5452_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8523..9149
DNA (627bp) protein (209aa)
DNA-3-methyladenine glycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F3C80 rbh
yfjP_[H]; HhH-GPD base excision DNA repair family protein; Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_5452_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9150..10037)
DNA (888bp) protein (296aa)
exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Thiobacillus denitrificans RepID=UPI000365C5DA rbh
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 12 items

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