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SCNpilot_expt_1000_bf_scaffold_7960

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Displaying 12 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7960_1
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..224
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA023 RepID=U8R4S2_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO81290.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_1000_bf_scaffold_7960_2
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

397..1491
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina DLHK PF9_PSEME">RepID=J7TPF9_PSEME rbh
Chemotaxis protein histidine kinase and related kinase {ECO:0000313|EMBL:BAO81289.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7960_3
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1909..3084)
DNA (1176bp) protein (392aa)
General substrate transporters n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S66_NITEU
general substrate transporters
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_expt_1000_bf_scaffold_7960_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3127..3444)
DNA (318bp) protein (106aa)
hypothetical protein; K09771 hypothetical protein id=12495455 bin=THIO_HI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
UPF0060 membrane protein Y695_00958 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein; K09771 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7960_5
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3441..4424)
DNA (984bp) protein (328aa)
cation diffusion facilitator family transporter id=12495454 bin=THIO_HI species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ENO97988.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
cation diffusion facilitator family transporter rbh
SCNpilot_expt_1000_bf_scaffold_7960_6
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4433..4711)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C5D8E
Uncharacterized protein {ECO:0000313|EMBL:ENO97989.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7960_7
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4816..5394)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHJ5_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_1000_bf_scaffold_7960_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6370..6753)
DNA (384bp) protein (128aa)
invasion gene expression up-regulator, SirB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036851A3
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_7960_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6757..7419)
DNA (663bp) protein (221aa)
putative 2-phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
phosphoglycolate phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037504EB rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_7960_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7424..8122)
DNA (699bp) protein (233aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC44D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_7960_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8131..9444)
DNA (1314bp) protein (438aa)
N-ethylammeline chlorohydrolase; K05394 atrazine chlorohydrolase [EC:3.8.1.8] rbh
N-ethylammeline chlorohydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003789560 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_7960_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9551..9892
DNA (342bp) protein (114aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] id=12494630 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 12 items

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