ggKbase home page

SCNpilot_expt_1000_bf_scaffold_388

Search features with annotation key words

Displaying items 1-30 of 172 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_388_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(574..999)
DNA (426bp) protein (142aa)
Integral membrane protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HJV6_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_388_2
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1237..1980)
DNA (744bp) protein (248aa)
Uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=D5CKG9_ENTCC
Uncharacterized protein {ECO:0000313|EMBL:AHM87975.1}; TaxID=1420012 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae 30660/NJST258_1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_388_3
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2063..2962)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Providencia rettgeri DSM 1131 RepID=D4BYT0_PRORE
Uncharacterized protein {ECO:0000313|EMBL:EWF64182.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_388_4
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3642..4667)
DNA (1026bp) protein (342aa)
Cation transporter n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GX12_9RHIZ rbh
Cation transporter {ECO:0000313|EMBL:ESZ68766.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
transmembrane efflux protein
SCNpilot_expt_1000_bf_scaffold_388_5
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4679..4957)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U9N6_METS4
hypothetical protein
Protein of unassigned function {ECO:0000313|EMBL:AIQ89575.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
SCNpilot_expt_1000_bf_scaffold_388_6
unknown

Not on your lists

5308..5715
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_388_7
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5862..6425
DNA (564bp) protein (188aa)
Mlr3584 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98FX0_RHILO
cytochrome B561
Mlr3584 protein {ECO:0000313|EMBL:BAB50446.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_388_8
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6464..6904)
DNA (441bp) protein (147aa)
UPI0003CF826B related cluster n=1 Tax=unknown RepID=UPI0003CF826B
Membrane protein {ECO:0000313|EMBL:ESY75308.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_388_9
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6918..8492)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XIM4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ERI14403.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
oxidoreductase; K04753 suppressor of ftsI
SCNpilot_expt_1000_bf_scaffold_388_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8541..9002)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F5C485
MerR family transcriptional regulator
Putative transcriptional regulator, MerR family {ECO:0000313|EMBL:ABS15945.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_388_11
unknown

Not on your lists

comp(8989..9168)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_388_12
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9179..9445)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036502B9
Glutaredoxin {ECO:0000313|EMBL:KGJ02324.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
glutaredoxin
SCNpilot_expt_1000_bf_scaffold_388_13
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9501..12041)
DNA (2541bp) protein (847aa)
PREDICTED: copper-transporting ATPase RAN1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C197CA rbh
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AFK54076.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_388_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12231..12434
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000378910C
Uncharacterized protein {ECO:0000313|EMBL:KEC79130.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein; K07213 copper chaperone
SCNpilot_expt_1000_bf_scaffold_388_15
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..14484
DNA (1965bp) protein (655aa)
Multicopper oxidase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FK48_9RHIZ rbh
Multicopper oxidase {ECO:0000313|EMBL:ESX75454.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
multicopper oxidase type 3 rbh
SCNpilot_expt_1000_bf_scaffold_388_16
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14554..15201
DNA (648bp) protein (216aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EZR0_9RHIZ
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:CCV09395.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
isoprenylcysteine carboxyl methyltransferase
SCNpilot_expt_1000_bf_scaffold_388_17
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15264..17339)
DNA (2076bp) protein (692aa)
Cobalt-zinc-cadmium resistance protein CzcA n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6D7_9RHIZ
Cobalt-zinc-cadmium resistance protein CzcA {ECO:0000313|EMBL:EHH12627.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
cusA; cation efflux system protein CusA
SCNpilot_expt_1000_bf_scaffold_388_18
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17519..18118
DNA (600bp) protein (200aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XI70_9RHIZ
raiI; autoinducer synthesis protein
SCNpilot_expt_1000_bf_scaffold_388_19
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18205..19878
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X094_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ERI14239.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
Biotin synthase 1 rbh
SCNpilot_expt_1000_bf_scaffold_388_20
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20126..20848
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XH26_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERI14240.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_388_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21254..21436
DNA (183bp) protein (61aa)
Helicase subunit of the DNA excision repair complex n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B5U2_RHIRD
Helicase subunit of the DNA excision repair complex {ECO:0000313|EMBL:EMS94835.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Helicase subunit of the DNA excision repair complex
SCNpilot_expt_1000_bf_scaffold_388_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21656..22576
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AUV2_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS94836.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_388_23
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22761..23366
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A4406
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM39583.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_388_24
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23377..23775
DNA (399bp) protein (133aa)
UPI0003CFC382 related cluster n=1 Tax=unknown RepID=UPI0003CFC382
Uncharacterized protein {ECO:0000313|EMBL:ESZ32892.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_388_25
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23859..28952
DNA (5094bp) protein (1698aa)
SNF-2-family methyltransferase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP77_AGRRK
Putative helicase {ECO:0000313|EMBL:GAK72278.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SNF-2-family methyltransferase
SCNpilot_expt_1000_bf_scaffold_388_26
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29119..29799
DNA (681bp) protein (227aa)
Transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFY2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EHH09336.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator; K07497 putative transposase
SCNpilot_expt_1000_bf_scaffold_388_27
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30005..30697)
DNA (693bp) protein (231aa)
RES domain protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9Z3_9RHIZ rbh
RES domain protein {ECO:0000313|EMBL:EHS50372.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_388_28
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30698..31126)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9Z4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS50373.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_388_29
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31524..33251
DNA (1728bp) protein (576aa)
Mll9312 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981M4_RHILO rbh
plasmid partitioning protein rbh
Mll9312 protein {ECO:0000313|EMBL:BAB54685.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_388_30
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33346..33822
DNA (477bp) protein (159aa)
UPI0003D04B40 related cluster n=1 Tax=unknown RepID=UPI0003D04B40
Uncharacterized protein {ECO:0000313|EMBL:ESZ32889.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
Displaying items 1-30 of 172 in total

View Taxonomy