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SCNpilot_expt_1000_bf_scaffold_1762

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1762_1
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..322
DNA (321bp) protein (107aa)
Maf-like protein MESS2_1250032 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIS1_9RHIZ
Maf-like protein MPLSOD_250014 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Maf family protein; K06287 septum formation protein
SCNpilot_expt_1000_bf_scaffold_1762_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

315..1154
DNA (840bp) protein (280aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
shikimate 5-dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI000372E5B5 rbh
SCNpilot_expt_1000_bf_scaffold_1762_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1154..1759
DNA (606bp) protein (202aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN45_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1762_4
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1810..2514
DNA (705bp) protein (235aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:ADV10030.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ADV10030.1};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
DNA polymerase III, epsilon subunit n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TGU4_MESCW
SCNpilot_expt_1000_bf_scaffold_1762_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..3637)
DNA (1074bp) protein (358aa)
UPI0003CF4870 related cluster n=1 Tax=unknown RepID=UPI0003CF4870
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB
SCNpilot_expt_1000_bf_scaffold_1762_6
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3829..4536
DNA (708bp) protein (236aa)
Import inner membrane translocase subunit Tim44 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TGU1_MESCW
import inner membrane translocase subunit Tim44
Import inner membrane translocase subunit Tim44 {ECO:0000313|EMBL:ADV10027.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1762_7
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4557..5693
DNA (1137bp) protein (379aa)
outer membrane lipoprotein GNA33, membrane-bound lytic murein transglycosylase; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
Transglycosylase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN50_9RHIZ
Transglycosylase {ECO:0000313|EMBL:ESX80307.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_1762_8
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5690..6217
DNA (528bp) protein (176aa)
Smr protein/MutS2 n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHU4_9RHIZ
Smr protein/MutS2 {ECO:0000313|EMBL:EHH07181.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Smr protein/MutS2
SCNpilot_expt_1000_bf_scaffold_1762_9
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6214..6594
DNA (381bp) protein (127aa)
Transcriptional regulator, XRE family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YA23_MESOW
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:EZQ14733.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_1762_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6692..7318
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFN1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV16117.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
glutathione S-transferase rbh
SCNpilot_expt_1000_bf_scaffold_1762_11
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7416..9005)
DNA (1590bp) protein (530aa)
peptide chain release factor 3 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000312ECED rbh
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
peptide chain release factor 3; K02837 peptide chain release factor 3
SCNpilot_expt_1000_bf_scaffold_1762_12
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9074..9868)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YGM1_MESOW
hypothetical protein; K07008 glutamine amidotransferase
Uncharacterized protein {ECO:0000313|EMBL:AEH84667.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_1762_13
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9882..10139)
DNA (258bp) protein (86aa)
UPI0003D03C95 related cluster n=1 Tax=unknown RepID=UPI0003D03C95
Type 1 capsular polysaccharide biosynthesis protein J {ECO:0000313|EMBL:ESZ04170.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1762_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10251..10718
DNA (468bp) protein (156aa)
Putative DNA-binding transcriptional regulator with homology to Lrp n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGE8_9RHIZ
Putative DNA-binding transcriptional regulator with homology to Lrp {ECO:0000313|EMBL:CCV03417.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1762_15
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10855..11340
DNA (486bp) protein (162aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQN4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1762_16
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11337..12023
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364A72E
haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED
HAD family hydrolase {ECO:0000313|EMBL:ESZ70885.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
SCNpilot_expt_1000_bf_scaffold_1762_17
unknown

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comp(12118..12612)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 141 RepID=UPI00036CAFB0
SCNpilot_expt_1000_bf_scaffold_1762_18
unknown

Not on your lists

comp(12625..14139)
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030ADB2B rbh
Amino acid permease {ECO:0000313|EMBL:CPR15829.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
amino acid permease-associated protein
SCNpilot_expt_1000_bf_scaffold_1762_19
unknown

Not on your lists

comp(14136..14234)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1762_20
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15139..15942
DNA (804bp) protein (268aa)
2-methylisocitrate lyase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003149BF6 rbh
2-methylisocitrate lyase {ECO:0000313|EMBL:EZQ14736.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1762_21
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15946..16689
DNA (744bp) protein (248aa)
proline racemase (EC:5.1.1.4)
UPI0003CE284F related cluster n=1 Tax=unknown RepID=UPI0003CE284F
Proline racemase {ECO:0000313|EMBL:ESZ60393.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
SCNpilot_expt_1000_bf_scaffold_1762_22
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16686..16919
DNA (234bp) protein (78aa)
proline racemase (EC:5.1.1.4)
Proline racemase {ECO:0000313|EMBL:ADV09350.1}; EC=5.1.1.4 {ECO:0000313|EMBL:ADV09350.1};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Proline racemase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T776_MESCW
SCNpilot_expt_1000_bf_scaffold_1762_23
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17163..18155
DNA (993bp) protein (331aa)
UPI0003D057C2 related cluster n=1 Tax=unknown RepID=UPI0003D057C2 rbh
Carbohydrate kinase {ECO:0000313|EMBL:ESZ25928.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
PfkB domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1762_24
unknown

Not on your lists

comp(18162..18401)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1762_25
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19032..20027
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000374A189
metal dependent phosphohydrolase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_1762_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20157..22079)
DNA (1923bp) protein (641aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000370DAA6 rbh
SMC protein-like protein {ECO:0000313|EMBL:EGD60750.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
RecF/RecN/SMC domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1762_27
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22376..22828)
DNA (453bp) protein (151aa)
deaminase reductase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035CC187
putative reductase protein
Putative reductase protein {ECO:0000313|EMBL:ACP25983.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1762_28
Paenibacillus sp. FSL P4-0081, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22947..23663
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037BA0A7
Uncharacterized protein {ECO:0000313|EMBL:AIQ27502.1}; TaxID=1536769 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL P4-0081.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1762_29
unknown

Not on your lists

comp(23702..24073)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1762_30
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24305..25087
DNA (783bp) protein (261aa)
Metal dependent phosphohydrolase n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KRT0_METC4
Metal-dependent phosphohydrolase, HD subdomain protein {ECO:0000313|EMBL:AIQ92720.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
Metal-dependent phosphohydrolase, HD subdomain
Displaying items 1-30 of 34 in total

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