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SCNpilot_expt_1000_bf_scaffold_1992

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1992_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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343..1323
DNA (981bp) protein (327aa)
Transglutaminase domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JC73_OLICO
transglutaminase
Transglutaminase-like protein, TAT translocated {ECO:0000313|EMBL:AEI07504.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1992_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1522..2601
DNA (1080bp) protein (360aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
selD; selenophosphate synthase SelD (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenide, water dikinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W8_9BRAD
SCNpilot_expt_1000_bf_scaffold_1992_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2793..4229
DNA (1437bp) protein (479aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
selA; L-seryl-tRNA selenium transferase SelA (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXY5_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1992_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4335..6404
DNA (2070bp) protein (690aa)
Selenocysteine-specific elongation factor SelB n=2 Tax=Oligotropha carboxidovorans RepID=B6JC82_OLICO
selB; selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
Selenocysteine-specific elongation factor SelB {ECO:0000313|EMBL:AEI07496.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1992_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6875..8026)
DNA (1152bp) protein (384aa)
Nickel/cobalt efflux system RcnA n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U5B5_9RHIZ rbh
Nickel/cobalt efflux system RcnA {ECO:0000313|EMBL:ENN85473.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
high-affinity nickel-transporter rbh
SCNpilot_expt_1000_bf_scaffold_1992_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8054..8326)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M036_METRJ
Uncharacterized protein in bioA 5'region {ECO:0000313|EMBL:CDP50366.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1992_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8446..9369)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000307A9F4 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KKB86682.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1992_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9673..10653
DNA (981bp) protein (327aa)
TRAP transporter-DctP subunit (Precursor) n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LUI4_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KKB86683.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
TRAP dicarboxylate transporter, DctP subunit
SCNpilot_expt_1000_bf_scaffold_1992_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10650..11441
DNA (792bp) protein (264aa)
Asp/Glu/Hydantoin racemase; K01799 maleate isomerase [EC:5.2.1.1] rbh
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00035EFB4D rbh
Asp/Glu racemase {ECO:0000313|EMBL:KKB86684.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1992_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11434..11943
DNA (510bp) protein (170aa)
TRAP transporter small transmembrane protein n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0ULL6_MYCVA
Uncharacterized protein {ECO:0000313|EMBL:KKB86685.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_expt_1000_bf_scaffold_1992_11
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11948..13216
DNA (1269bp) protein (423aa)
TRAP transporter-DctM subunit n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LUI6_DINSH rbh
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KHJ53641.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
TRAP dicarboxylate transporter, DctM subunit rbh
SCNpilot_expt_1000_bf_scaffold_1992_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13337..14314
DNA (978bp) protein (326aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; K12972 gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81] rbh
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031079AE rbh
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KKB86686.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1992_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14395..15663)
DNA (1269bp) protein (423aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (EC:3.5.1.16)
acetylornithine deacetylase n=1 Tax=Kaistia granuli RepID=UPI00036A6EA3 rbh
Acetylornithine deacetylase {ECO:0000313|EMBL:KKB86692.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1992_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15727..16182)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000302E807
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KKB86691.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
TRAP C4-dicarboxylate transport system permease DctM
SCNpilot_expt_1000_bf_scaffold_1992_15
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17026..17697)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003803A21
dctQ3; TRAP dicarboxylate transporter subunit DctQ
Tax=RBG_16_Deltaproteobacteria_49_23_curated
SCNpilot_expt_1000_bf_scaffold_1992_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17776..18783)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FBF93F rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86690.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
dctP; TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_1992_17
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19024..19893
DNA (870bp) protein (290aa)
carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M) (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031674B0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86689.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1992_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19890..20381
DNA (492bp) protein (164aa)
carbon monoxide dehydrogenase (EC:1.2.99.2); K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EB7833
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KKB86688.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1992_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20383..22725
DNA (2343bp) protein (781aa)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J720_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKB86687.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative carbon-monoxide dehydrogenase large subunit, coxL-like protein
SCNpilot_expt_1000_bf_scaffold_1992_20
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22796..24271)
DNA (1476bp) protein (492aa)
Cysteine synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCE7_9RHOB rbh
Pyridoxal-5'-phosphate-dependent protein subunit beta {ECO:0000313|EMBL:KKB86679.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
pyridoxal-5'-phosphate-dependent enzyme subunit beta
SCNpilot_expt_1000_bf_scaffold_1992_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24284..25489)
DNA (1206bp) protein (402aa)
diaminopropionate ammonia-lyase; K01751 diaminopropionate ammonia-lyase [EC:4.3.1.15]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D4AFFF
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:KKB86711.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1992_22
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25610..26410)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003064793 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB86710.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1992_23
unknown

Not on your lists

comp(26383..26502)
DNA (120bp) protein (40aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030A4033
Displaying 23 items

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