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SCNpilot_expt_1000_bf_scaffold_2125

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2125_1
unknown

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2125_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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148..1176
DNA (1029bp) protein (343aa)
trans-hexaprenyltranstransferase (EC:2.5.1.30); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] rbh
octaprenyl diphosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003805A8C rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1573..2175
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D28EB rbh
putative TetR-type transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2172..3266
DNA (1095bp) protein (365aa)
RND family efflux transporter MFP subunit; K03585 membrane fusion protein id=12494399 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3268..6369
DNA (3102bp) protein (1034aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A7397 rbh
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_2125_6
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6362..7774
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000373A2E8 rbh
NodT family RND efflux system outer membrane lipoprotein rbh
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_2125_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7864..8115
DNA (252bp) protein (84aa)
cytochrome C551 n=1 Tax=Thiobacillus thioparus RepID=UPI00035CF007
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8131..8733
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC4E4 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8802..10877
DNA (2076bp) protein (692aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
methionyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI000381BA44 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10882..11151
DNA (270bp) protein (90aa)
putative acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] id=12497700 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2125_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11373..12461)
DNA (1089bp) protein (363aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] id=12497701 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_2125_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12415..12894)
DNA (480bp) protein (160aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III, alpha subunit id=1324808 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 12 items

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