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SCNpilot_expt_1000_bf_scaffold_2356

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2356_1
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(106..1167)
DNA (1062bp) protein (354aa)
integrase n=1 Tax=Methylotenera mobilis RepID=UPI0003810769 rbh
integrase family protein rbh
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_2356_2
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1385..2695)
DNA (1311bp) protein (437aa)
Replication initiation factor n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GL20_NITSI rbh
replication initiation factor rbh
Replication initiation factor {ECO:0000313|EMBL:AEJ01793.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_1000_bf_scaffold_2356_3
R_WOR_1_46_20, WOR-1, Bacteria

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comp(2795..3703)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DL96_METS0
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
SCNpilot_expt_1000_bf_scaffold_2356_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3919..4290
DNA (372bp) protein (124aa)
QacE-like protein; integron orf n=1 Tax=Janthinobacterium lividum RepID=UPI000289B9F7
QacE {ECO:0000313|EMBL:KGI79240.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
QacE-like protein; integron orf
SCNpilot_expt_1000_bf_scaffold_2356_5

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4322..5950
DNA (1629bp) protein (543aa)
Marine sediment metagenome DNA, contig: S01H4_S11612 {ECO:0000313|EMBL:GAH00531.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_2356_6
unknown

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comp(5978..6799)
DNA (822bp) protein (274aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2356_7
unknown

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comp(6853..7059)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2356_8
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7621..8088
DNA (468bp) protein (156aa)
fimbrial protein n=1 Tax=Neisseria lactamica RepID=UPI0002E9E421
Fimbrial protein {ECO:0000313|EMBL:EXB87815.1}; TaxID=1310639 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 272263.;"
Fimbrial protein pilin; K02650 type IV pilus assembly protein PilA
SCNpilot_expt_1000_bf_scaffold_2356_9
unknown

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comp(8116..8478)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2356_10
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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8646..8993
DNA (348bp) protein (116aa)
transposase IS200 n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B326DF
transposase; K07491 putative transposase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_2356_11

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8993..9328
DNA (336bp) protein (112aa)
Prevent-host-death family protein n=1 Tax=mine drainage metagenome RepID=T1B1U8_9ZZZZ
Prevent-host-death family protein {ECO:0000313|EMBL:EQD62533.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
prevent-host-death family protein
SCNpilot_expt_1000_bf_scaffold_2356_12

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9328..9744
DNA (417bp) protein (139aa)
PilT domain-containing protein n=1 Tax=mine drainage metagenome RepID=T1D7U0_9ZZZZ
PilT domain-containing protein {ECO:0000313|EMBL:EQD77489.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2356_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9734..10207)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003726CC9
putative regulatory protein RecX; K03565 regulatory protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2356_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10191..10457)
DNA (267bp) protein (89aa)
recombinase RecA n=1 Tax=Thiobacillus thioparus RepID=UPI00037D51CF
recA; recombinase A; K03553 recombination protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 14 items

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