ggKbase home page

SCNpilot_expt_1000_bf_scaffold_475

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_475_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..329)
DNA (327bp) protein (109aa)
ArsR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F739
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:KFC70212.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_475_2
Vibrio maritimus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(580..1299)
DNA (720bp) protein (240aa)
fructan beta-fructosidase (EC:3.2.1.80); K01212 levanase [EC:3.2.1.65]
Fructan beta-fructosidase n=1 Tax=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) RepID=F2JWX2_MARM1
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:GAL20661.1}; TaxID=990268 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio maritimus.;"
SCNpilot_expt_1000_bf_scaffold_475_3
Halomonas campaniensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1345..1836)
DNA (492bp) protein (164aa)
Glycosyl hydrolase family 32 domain-containing protein; K01212 levanase [EC:3.2.1.65]
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HDQ6_9SPHI
Glycosyl hydrolase family 32 {ECO:0000313|EMBL:AIA75723.1}; TaxID=213554 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas campaniensis.;"
SCNpilot_expt_1000_bf_scaffold_475_4
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(2002..3090)
DNA (1089bp) protein (363aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMR8_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU58839.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_expt_1000_bf_scaffold_475_5
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3116..4099)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00036006C1
ABC transporter {ECO:0000313|EMBL:KKB80334.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
oligopeptide transport ATP-binding protein OppF; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_475_6
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(4096..4926)
DNA (831bp) protein (277aa)
Putative oligopeptide transport atp-binding abc transporter protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L2R1_THERP
putative oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein
Putative oligopeptide transport atp-binding abc transporter protein {ECO:0000313|EMBL:ACM05447.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_expt_1000_bf_scaffold_475_7
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(4923..5789)
DNA (867bp) protein (289aa)
Maltose ABC transporter, permease n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L2Q8_THERP
maltose ABC transporter permease; K02034 peptide/nickel transport system permease protein
Maltose ABC transporter, permease {ECO:0000313|EMBL:ACM05736.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_expt_1000_bf_scaffold_475_8
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(5792..6784)
DNA (993bp) protein (331aa)
Putative ABC transporter permease protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7J2_CALAS
ABC transporter permease; K02033 peptide/nickel transport system permease protein
Putative ABC transporter permease protein {ECO:0000313|EMBL:BAM01230.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SCNpilot_expt_1000_bf_scaffold_475_9
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(6851..8599)
DNA (1749bp) protein (583aa)
Putative ABC transporter substrate binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7J1_CALAS rbh
putative ABC transporter substrate binding protein rbh
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAM01229.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SCNpilot_expt_1000_bf_scaffold_475_10
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8686..9687)
DNA (1002bp) protein (334aa)
LacI family transcriptional regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FFV1_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:ESX72466.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_475_11
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10555..10914
DNA (360bp) protein (120aa)
transposase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F737
Transposase {ECO:0000313|EMBL:KKC31153.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transposase
SCNpilot_expt_1000_bf_scaffold_475_12
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10944..11222
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4QRD2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ81738.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
transposase
SCNpilot_expt_1000_bf_scaffold_475_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11409..12323)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036DFB38 rbh
Transcriptional regulator {ECO:0000313|EMBL:EIM25391.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
transcriptional regulator protein rbh
SCNpilot_expt_1000_bf_scaffold_475_14
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12423..13493
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035CA495 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHK72776.1}; TaxID=1112217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas psychrotolerans L19.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_475_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13554..15125
DNA (1572bp) protein (524aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000368E920 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM34386.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1 rbh
SCNpilot_expt_1000_bf_scaffold_475_16
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15134..16936
DNA (1803bp) protein (601aa)
Hydrolase CocE/NonD family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZX62_9PROT
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:EHM02452.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
FIG00482872: hypothetical protein
SCNpilot_expt_1000_bf_scaffold_475_17
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16961..17932
DNA (972bp) protein (324aa)
Putative oligopeptide ABC transporter, permease protein AppB n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A3N5_9PROT
Putative oligopeptide ABC transporter, permease protein AppB {ECO:0000313|EMBL:EHL98905.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_475_18
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17929..18834
DNA (906bp) protein (302aa)
peptide ABC transporter permease n=1 Tax=Roseomonas sp. B5 RepID=UPI00030C76D8
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHP39902.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
ABC transporter permease; K15582 oligopeptide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_475_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18844..19812
DNA (969bp) protein (323aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ5_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11793.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_475_20
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19809..20867
DNA (1059bp) protein (353aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ6_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11794.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
dppF; Dipeptide transport ATP-binding (ABC superfamily)
SCNpilot_expt_1000_bf_scaffold_475_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20864..21862
DNA (999bp) protein (333aa)
Putative esterase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WCZ3_9BRAD
Esterase {ECO:0000313|EMBL:KJC33511.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_475_22
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22024..22254)
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB75884.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_475_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22241..23443)
DNA (1203bp) protein (401aa)
UPI0003CE10A3 related cluster n=1 Tax=unknown RepID=UPI0003CE10A3
Transposase {ECO:0000313|EMBL:KFC70251.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transposase
SCNpilot_expt_1000_bf_scaffold_475_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23447..24355)
DNA (909bp) protein (303aa)
Integrase/recombinase n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U5T6_9PROT rbh
Integrase {ECO:0000313|EMBL:KKB75883.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
integrase/recombinase rbh
SCNpilot_expt_1000_bf_scaffold_475_25
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24667..25575
DNA (909bp) protein (303aa)
integrase, partial n=1 Tax=Rhizobium leguminosarum RepID=UPI00038187C9
Integrase {ECO:0000313|EMBL:KKB75883.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
integrase/recombinase
SCNpilot_expt_1000_bf_scaffold_475_26
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25579..26778
DNA (1200bp) protein (400aa)
UPI0003CE10A3 related cluster n=1 Tax=unknown RepID=UPI0003CE10A3
Transposase {ECO:0000313|EMBL:KKC31371.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transposase
SCNpilot_expt_1000_bf_scaffold_475_27
unknown

Not on your lists

26775..27404
DNA (630bp) protein (210aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_475_28
bacterium YEK0313, Bacteria

Not on your lists

28462..32106
DNA (3645bp) protein (1215aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNW4_MESCW rbh
Extracellular serine protease {ECO:0000313|EMBL:CEJ10039.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
outer membrane autotransporter barrel domain protein rbh
SCNpilot_expt_1000_bf_scaffold_475_29
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32196..32735
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMM7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KHJ54052.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
invasion associated locus B family protein
SCNpilot_expt_1000_bf_scaffold_475_30
bacterium YEK0313, Bacteria

Not on your lists

32813..33913
DNA (1101bp) protein (367aa)
Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3J6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ10038.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
LuxR family transcriptional regulator
Displaying items 1-30 of 160 in total

View Taxonomy