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SCNpilot_expt_1000_bf_scaffold_861

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_861_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128..1567)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIP1_9GAMM rbh
signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_861_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1515..2207)
DNA (693bp) protein (231aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYX3_9GAMM rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EIL92414.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
SCNpilot_expt_1000_bf_scaffold_861_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2209..2520)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMI5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87679.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_861_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2602..3600)
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMI6_9GAMM rbh
tRNA-U16,U17-dihydrouridine synthase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_861_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3690..4961
DNA (1272bp) protein (424aa)
Integrase family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWK1_VARPS rbh
integrase family protein rbh
Integrase family protein {ECO:0000313|EMBL:ACS18756.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_861_6
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5034..5378
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas fluorescens RepID=C7DRH1_PSEFL
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_861_7
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5393..5785
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM80 RepID=J3DTB5_9PSED
XRE family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_861_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5884..6591
DNA (708bp) protein (236aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
SCNpilot_expt_1000_bf_scaffold_861_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6607..7803)
DNA (1197bp) protein (399aa)
UPI0003CE6455 related cluster n=2 Tax=unknown RepID=UPI0003CE6455
Uncharacterized protein {ECO:0000313|EMBL:KKB76805.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_861_10
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8146..9747
DNA (1602bp) protein (534aa)
UPI0003CE6455 related cluster n=2 Tax=unknown RepID=UPI0003CE6455
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ71487.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_861_11
unknown

Not on your lists

9857..10207
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_861_12
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10281..10505)
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM57482.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
SCNpilot_expt_1000_bf_scaffold_861_13
Pseudomonas sp. GM30, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11208..11960
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM30 RepID=J2QPK0_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EUB86996.1}; TaxID=1144328 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM30.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_861_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12129..12551
DNA (423bp) protein (141aa)
DNA-binding protein H-NS n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUR1_9GAMM
DNA-binding protein H-NS {ECO:0000313|EMBL:EIL90952.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA-binding protein H-NS
SCNpilot_expt_1000_bf_scaffold_861_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12569..13057)
DNA (489bp) protein (163aa)
DNA repair protein RadC n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2J3_9GAMM
DNA repair protein RadC {ECO:0000313|EMBL:KGI76895.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
DNA repair protein
SCNpilot_expt_1000_bf_scaffold_861_16
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13533..18680)
DNA (5148bp) protein (1716aa)
AAA ATPase central domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C158_NITHN
ATPase AAA
AAA ATPase central domain protein {ECO:0000313|EMBL:ADE14615.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_1000_bf_scaffold_861_17
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18677..20206)
DNA (1530bp) protein (510aa)
Uncharacterized protein {ECO:0000313|EMBL:BAO27838.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_861_18
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20203..22293)
DNA (2091bp) protein (697aa)
UPI0003D06A4F related cluster n=1 Tax=unknown RepID=UPI0003D06A4F
Uncharacterized protein {ECO:0000313|EMBL:ESZ22823.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Zeta toxin
SCNpilot_expt_1000_bf_scaffold_861_19
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22373..22924)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003716216
Uncharacterized protein {ECO:0000313|EMBL:AKC87192.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
A/G-specific DNA glycosylase
SCNpilot_expt_1000_bf_scaffold_861_20
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22968..24263)
DNA (1296bp) protein (432aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
modification methylase DdeI (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) RepID=A0KH69_AERHH rbh
SCNpilot_expt_1000_bf_scaffold_861_21
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24486..24995)
DNA (510bp) protein (170aa)
Uncharacterized protein n=3 Tax=Pseudomonas syringae pv. actinidiae RepID=S6Q6C4_PSESF
Uncharacterized protein {ECO:0000313|EMBL:KCU95063.1}; TaxID=1194418 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. actinidiae ICMP 9617.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_861_22
Porphyromonas cangingivalis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25082..25822)
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3M1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGN80982.1}; TaxID=36874 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas cangingivalis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_861_23
Pseudomonas cichorii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26026..26904
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA015 RepID=U9MH39_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AHF69008.1}; TaxID=1441629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cichorii JBC1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_861_24
unknown

Not on your lists

comp(27383..27457)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 24 items

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