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SCNpilot_expt_1000_bf_scaffold_982

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_982_1
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139..552)
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IU51_9BURK
SURF4 family protein {ECO:0000313|EMBL:AJZ63214.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
DoxX family protein; K15977 putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_982_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(806..1573)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348D2F2
Uncharacterized protein {ECO:0000313|EMBL:AIF47811.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_1000_bf_scaffold_982_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1799..2491)
DNA (693bp) protein (231aa)
Universal bacterial protein YeaZ n=1 Tax=Rhodanobacter denitrificans RepID=M4NGZ6_9GAMM rbh
universal bacterial protein YeaZ rbh
Universal bacterial protein YeaZ {ECO:0000313|EMBL:AGG90220.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_982_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2488..3837)
DNA (1350bp) protein (450aa)
Inner membrane protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S6_9GAMM rbh
Inner membrane protein {ECO:0000313|EMBL:EIL94467.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Inner membrane protein involved in colicin E2 resistance rbh
SCNpilot_expt_1000_bf_scaffold_982_5
unknown

Not on your lists

comp(3959..4201)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_982_6
Pseudomonas sp. GM80, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4281..5093)
DNA (813bp) protein (271aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Pseudomonas sp. GM80 RepID=J3DW70_9PSED rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJN34369.1}; Flags: Precursor;; TaxID=1144339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM80.;"
alpha/beta fold family hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_982_7
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5146..5571)
DNA (426bp) protein (142aa)
OsmC family protein n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FCT0_9BURK
OsmC family protein {ECO:0000313|EMBL:EHK64035.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
OsmC family protein
SCNpilot_expt_1000_bf_scaffold_982_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5719..7347)
DNA (1629bp) protein (543aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S5_9GAMM rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL94466.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC transporter ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_982_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7510..8343)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002DB038C rbh
Oxidoreductase {ECO:0000313|EMBL:AHX13463.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_982_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8545..9054)
DNA (510bp) protein (170aa)
Cytochrome p460 n=1 Tax=Pseudomonas fluorescens Q2-87 RepID=J2YEX1_PSEFL
Cytochrome p460 {ECO:0000313|EMBL:EJL05474.1}; TaxID=1038922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q2-87.;"
cyp; cytochrome p460
SCNpilot_expt_1000_bf_scaffold_982_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9197..10249)
DNA (1053bp) protein (351aa)
Putative hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) n=1 Tax=Pseudomonas fluorescens BBc6R8 RepID=V7EAH3_PSEFL rbh
Putative hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:ESW57948.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
alpha/beta fold family hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_982_12
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10305..10910)
DNA (606bp) protein (202aa)
Integral membrane protein n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4QSG2_9ACTO
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:CCK24596.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
SCNpilot_expt_1000_bf_scaffold_982_13
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10907..12256)
DNA (1350bp) protein (450aa)
Epoxide hydrolase-like protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HPA2_PSEUO rbh
Multidrug MFS transporter {ECO:0000313|EMBL:ETM63286.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
epoxide hydrolase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_982_14
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12772..13803)
DNA (1032bp) protein (344aa)
Conserved hypothetical phage protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZG3_BORA1 rbh
hypothetical protein rbh
Conserved hypothetical phage protein {ECO:0000313|EMBL:CAJ47971.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_expt_1000_bf_scaffold_982_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13788..15416)
DNA (1629bp) protein (543aa)
Conserved hypothetical phage protein (Fragment) n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZG1_BORA1 rbh
ATP-dependent endonuclease {ECO:0000313|EMBL:KGH06007.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_982_16
Pseudomonas sp. RIT288, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15674..16975
DNA (1302bp) protein (434aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CD82_XANCA
Putative restriction enzyme-related protein {ECO:0000313|EMBL:EZP33267.1}; TaxID=1470589 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. RIT288.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_982_17
unknown

Not on your lists

16986..17396
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_982_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17454..18200)
DNA (747bp) protein (249aa)
short-chain dehydrogenase/reductase sdr; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1V5_VARPE rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU37958.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_1000_bf_scaffold_982_19
Pseudomonas sp. SHC52, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18797..21631
DNA (2835bp) protein (945aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=984195 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. SHC52.;"
Multi-sensory box histidine kinase n=1 Tax=Pseudomonas fluorescens Q2-87 RepID=J2YDK3_PSEFL rbh
multi-sensor signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_982_20
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21631..22002
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI00030B2B6B
Chemotaxis protein CheY {ECO:0000313|EMBL:KES21090.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
response regulator receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_982_21
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22034..22711
DNA (678bp) protein (226aa)
Two component LuxR family transcriptional regulator n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HQB7_PSEUO
LuxR family transcriptional regulator {ECO:0000313|EMBL:ETM63282.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
two component LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_982_22
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22744..23514)
DNA (771bp) protein (257aa)
ABC transporter substrate-binding protein n=1 Tax=Nevskia ramosa RepID=UPI0003B5FCC2
Periplasmic binding protein {ECO:0000313|EMBL:EIT70015.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_982_23
unknown

Not on your lists

23866..24375
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_982_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24249..24734)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEB6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88277.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_982_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24936..25523
DNA (588bp) protein (196aa)
Putative amidophosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTE3_9GAMM rbh
putative amidophosphoribosyltransferase rbh
Putative amidophosphoribosyltransferase {ECO:0000313|EMBL:AGG88276.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_982_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25520..26179
DNA (660bp) protein (220aa)
Adenine specific DNA methylase Mod n=1 Tax=Rhodanobacter denitrificans RepID=M4NC80_9GAMM
adenine specific DNA methylase Mod
Adenine specific DNA methylase Mod {ECO:0000313|EMBL:AGG88275.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_982_27
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

26394..27944
DNA (1551bp) protein (517aa)
Methyltransferase n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4V062_XANC8 rbh
methyltransferase rbh
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_1000_bf_scaffold_982_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27946..30456
DNA (2511bp) protein (837aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTE1_9GAMM rbh
DNA/RNA helicase, superfamily II rbh
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGG88274.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_982_29

Not on your lists

30706..31425
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QB93_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04469.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_982_30
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31382..31864)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WE62_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM55919.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying items 1-30 of 36 in total

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