ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2256

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2256_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
Cbb3-type cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTF0_9GAMM
Cbb3-type cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL90491.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Cbb3-type cytochrome oxidase, cytochrome c subunit
SCNpilot_expt_1000_bf_scaffold_2256_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

396..557
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QVC2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG63728.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_2256_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

572..1021
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTE9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90490.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2256_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1441..1782
DNA (342bp) protein (114aa)
Alkylhydroperoxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPG9_9GAMM
alkylhydroperoxidase AhpD family core domain protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2256_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1784..2734
DNA (951bp) protein (317aa)
cysteine synthase (EC:2.5.1.47) rbh
Pyridoxal-5'-phosphate-dependent enzyme subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWA8_9GAMM rbh
Pyridoxal-5'-phosphate-dependent enzyme subunit beta {ECO:0000313|EMBL:EIL91499.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_2256_6
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2780..4486)
DNA (1707bp) protein (569aa)
hypothetical protein rbh
hypothetical protein id=24657759 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_2256_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4685..5344)
DNA (660bp) protein (220aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA2_9GAMM rbh
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2256_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5552..7300
DNA (1749bp) protein (583aa)
Putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIW5_9GAMM rbh
Putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane {ECO:0000313|EMBL:EIL99406.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3HB-oligomer hydrolase (3HBOH) rbh
SCNpilot_expt_1000_bf_scaffold_2256_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7481..10006
DNA (2526bp) protein (842aa)
TonB-denpendent receptor n=1 Tax=Dyella ginsengisoli RepID=UPI0003494078 rbh
Outer membrane receptor protein {ECO:0000313|EMBL:AGG87861.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
outer membrane receptor protein rbh
SCNpilot_expt_1000_bf_scaffold_2256_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10134..10814
DNA (681bp) protein (227aa)
Trehalose/maltose hydrolase or phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NB95_9GAMM
trehalose/maltose hydrolase or phosphorylase
Trehalose/maltose hydrolase or phosphorylase {ECO:0000313|EMBL:AGG87859.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2256_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11048..12376
DNA (1329bp) protein (443aa)
Trehalose/maltose hydrolase or phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NB95_9GAMM rbh
trehalose/maltose hydrolase or phosphorylase rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_1000_bf_scaffold_2256_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12373..14016
DNA (1644bp) protein (548aa)
Alpha,alpha-trehalase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH34_9GAMM rbh
Alpha,alpha-trehalase {ECO:0000313|EMBL:EIL98775.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
neutral trehalase rbh
SCNpilot_expt_1000_bf_scaffold_2256_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14091..14600
DNA (510bp) protein (170aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIW4_9GAMM rbh
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family rbh
SCNpilot_expt_1000_bf_scaffold_2256_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14736..15155
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW57_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91448.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2256_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15202..15456)
DNA (255bp) protein (85aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WV98_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG88682.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2256_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15617..16816
DNA (1200bp) protein (400aa)
Aspartate aminotransferase A n=1 Tax=Rhodanobacter denitrificans RepID=I4WV97_9GAMM rbh
aspartate/tyrosine/aromatic aminotransferase rbh
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:AGG88683.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2256_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16928..17911
DNA (984bp) protein (328aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Malate dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIW1_9GAMM rbh
malate dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_2256_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18028..19236)
DNA (1209bp) protein (403aa)
Transporter, cpa2 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXE7_9GAMM rbh
Kef-type K+ transport system, membrane component rbh
Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:AGG89261.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2256_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19312..20775)
DNA (1464bp) protein (488aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHZ4_9GAMM rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIL99085.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
arabinose efflux permease family protein rbh
SCNpilot_expt_1000_bf_scaffold_2256_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20950..21387
DNA (438bp) protein (146aa)
GreA/GreB family elongation factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHZ5_9GAMM
GreA/GreB family elongation factor {ECO:0000313|EMBL:EIL99086.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcription elongation factor
SCNpilot_expt_1000_bf_scaffold_2256_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21460..23757
DNA (2298bp) protein (766aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX04_9GAMM rbh
DNA ligase, NAD-dependent
SCNpilot_expt_1000_bf_scaffold_2256_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23757..24713
DNA (957bp) protein (319aa)
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|SAAS:SAAS00088906}; EC=6.3.1.- {ECO:0000256|SAAS:SAAS00088909};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Lysyl-tRNA synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX05_9GAMM rbh
lysyl-tRNA synthetase-like protein GenX rbh
SCNpilot_expt_1000_bf_scaffold_2256_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24932..26236
DNA (1305bp) protein (435aa)
Major facilitator superfamily permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX08_9GAMM rbh
Major facilitator superfamily permease {ECO:0000313|EMBL:EIL91749.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein rbh
SCNpilot_expt_1000_bf_scaffold_2256_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26318..27004)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI03_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99094.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR02453 family protein rbh
SCNpilot_expt_1000_bf_scaffold_2256_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27077..28519)
DNA (1443bp) protein (481aa)
exonuclease I (EC:3.1.11.1) rbh
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Exonuclease I n=1 Tax=Rhodanobacter denitrificans RepID=M4NHV4_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_2256_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28589..29152
DNA (564bp) protein (188aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Oligoribonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WXF6_9GAMM rbh
oligoribonuclease (3'->5' exoribonuclease) rbh
SCNpilot_expt_1000_bf_scaffold_2256_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29190..30032
DNA (843bp) protein (281aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
dihydropteroate synthase n=1 Tax=Dyella japonica RepID=UPI000304A180
dihydropteroate synthase
Displaying 27 items

View Taxonomy