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SCNpilot_expt_1000_bf_scaffold_2488

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2488_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1870)
DNA (1869bp) protein (623aa)
Cation transporting P-type ATPase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0R3_9GAMM
Cation transporting P-type ATPase {ECO:0000313|EMBL:EIL93054.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
P-type ATPase, translocating
SCNpilot_expt_1000_bf_scaffold_2488_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1893..2330)
DNA (438bp) protein (146aa)
Universal stress protein UspA-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYP9_9GAMM
universal stress protein UspA-like protein
Universal stress protein UspA-like protein {ECO:0000313|EMBL:AGG89865.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2488_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2356..3117)
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter denitrificans RepID=I4WYQ0_9GAMM rbh
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89864.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2488_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3226..4344)
DNA (1119bp) protein (373aa)
Pyridoxal-5'-phosphate-dependent protein subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTY6_9GAMM rbh
Pyridoxal-5'-phosphate-dependent protein subunit beta {ECO:0000313|EMBL:EIM02928.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cysteine synthase rbh
SCNpilot_expt_1000_bf_scaffold_2488_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4587..5024
DNA (438bp) protein (146aa)
Integral membrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VX95_9GAMM
Integral membrane protein {ECO:0000313|EMBL:EIL91836.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2488_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5050..5550
DNA (501bp) protein (167aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
peroxiredoxin (EC:1.11.1.5)
Probable thiol peroxidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VX94_9GAMM
SCNpilot_expt_1000_bf_scaffold_2488_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5745..6152)
DNA (408bp) protein (136aa)
Globin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1C9_9GAMM
Globin {ECO:0000313|EMBL:EIL93270.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
truncated hemoglobin
SCNpilot_expt_1000_bf_scaffold_2488_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6241..6687)
DNA (447bp) protein (149aa)
Azurin n=1 Tax=Rhodanobacter denitrificans RepID=I4WME7_9GAMM
azurin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2488_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6829..7152
DNA (324bp) protein (108aa)
Ferredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WME6_9GAMM
ferredoxin
Ferredoxin {ECO:0000313|EMBL:AGG87717.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2488_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7340..9649
DNA (2310bp) protein (770aa)
Nitric-oxide reductase subunit B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1D2_9GAMM rbh
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:EIL93273.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nitric oxide reductase large subunit rbh
SCNpilot_expt_1000_bf_scaffold_2488_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9721..10068)
DNA (348bp) protein (116aa)
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glyceraldehyde-3-phosphate dehydrogenase (NAD+) n=1 Tax=Rhodanobacter denitrificans RepID=M4NE03_9GAMM
Displaying 11 items

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