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SCNpilot_expt_1000_bf_scaffold_2655

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2655_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..470)
DNA (468bp) protein (156aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY8_9GAMM
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component {ECO:0000313|EMBL:AGG87698.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2655_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(582..1562)
DNA (981bp) protein (327aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYV2_9GAMM rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EIL92393.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit rbh
SCNpilot_expt_1000_bf_scaffold_2655_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1566..2651)
DNA (1086bp) protein (362aa)
Pyruvate dehydrogenase E1 alpha subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB3_9GAMM
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL99904.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate dehydrogenase E1 component, alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_2655_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2984..3832
DNA (849bp) protein (283aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rho
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIQ7_9GAMM rbh
tryptophan 2,3-dioxygenase (vermilion) rbh
SCNpilot_expt_1000_bf_scaffold_2655_5
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3847..4557)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F18891
ArsR family transcriptional regulator {ECO:0000313|EMBL:AIF45904.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2655_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4735..6237
DNA (1503bp) protein (501aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE68_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL97759.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
amino acid/peptide transporter (peptide:H symporter) rbh
SCNpilot_expt_1000_bf_scaffold_2655_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6422..7930
DNA (1509bp) protein (503aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB6_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL99907.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid/peptide transporter (peptide:H symporter) rbh
SCNpilot_expt_1000_bf_scaffold_2655_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8028..8489)
DNA (462bp) protein (154aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE62_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2655_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8597..9616
DNA (1020bp) protein (340aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU6_9GAMM
4-hydroxyphenylpyruvate dioxygenase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 9 items

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