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SCNpilot_expt_1000_bf_scaffold_2888

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2888_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..263)
DNA (261bp) protein (87aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVD9_9GAMM
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:EIL91180.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative endonuclease containing a URI domain
SCNpilot_expt_1000_bf_scaffold_2888_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(268..897)
DNA (630bp) protein (210aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS29_9GAMM rbh
Glutathione S-transferase {ECO:0000313|EMBL:EIL90020.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutathione S-transferase rbh
SCNpilot_expt_1000_bf_scaffold_2888_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1030..2892)
DNA (1863bp) protein (621aa)
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Rhodanobacter denitrificans RepID=M4NJT8_9GAMM rbh
ATPase component of ABC transporters with duplicated ATPase domain {ECO:0000313|EMBL:AGG90357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATPase component of ABC transporters with duplicated ATPase domain rbh
SCNpilot_expt_1000_bf_scaffold_2888_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2948..3532)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07KS1_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07463.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_2888_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3777..4973)
DNA (1197bp) protein (399aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methionine adenosyltransferase (EC:2.5.1.6) rbh
S-adenosylmethionine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSZ6_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_2888_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5137..6291)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ16 RepID=UPI0003762E6F rbh
Uncharacterized protein {ECO:0000313|EMBL:KGI77072.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
polar amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2888_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6470..8167
DNA (1698bp) protein (566aa)
Phospholipid/glycerol acyltransferase n=2 Tax=Rhodanobacter sp. 115 RepID=I4WAS7_9GAMM
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EIL96568.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phospholipid/glycerol acyltransferase
SCNpilot_expt_1000_bf_scaffold_2888_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8217..9038)
DNA (822bp) protein (274aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA-dihydrouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHH4_9GAMM
tRNA-U20-dihydrouridine synthase
SCNpilot_expt_1000_bf_scaffold_2888_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9058..10185)
DNA (1128bp) protein (376aa)
PepSY-associated TM helix n=1 Tax=Rhodanobacter denitrificans RepID=I4WVQ9_9GAMM rbh
putative iron-regulated membrane protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2888_10
unknown

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12103..12432
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2888_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12493..13773)
DNA (1281bp) protein (427aa)
Nucleoside transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WVQ8_9GAMM rbh
nucleoside transporter rbh
Nucleoside transporter {ECO:0000313|EMBL:AGG90351.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2888_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14003..14665)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVE6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91187.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uracil-DNA glycosylase rbh
SCNpilot_expt_1000_bf_scaffold_2888_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14675..16045)
DNA (1371bp) protein (457aa)
Fad/fmn-containing dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVE7_9GAMM rbh
Fad/fmn-containing dehydrogenase {ECO:0000313|EMBL:EIL91188.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
FAD/FMN-dependent dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2888_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16072..16428)
DNA (357bp) protein (119aa)
UPF0102 protein UU7_14093 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVE8_9GAMM
UPF0102 protein UU7_14093 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TIGR00252 family protein
SCNpilot_expt_1000_bf_scaffold_2888_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16428..18386)
DNA (1959bp) protein (653aa)
Putative lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJS3_9GAMM rbh
putative lipoprotein rbh
Putative lipoprotein {ECO:0000313|EMBL:AGG90347.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 15 items

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