ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1035

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1035_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..563)
DNA (561bp) protein (187aa)
Alpha/beta hydrolase fold domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU1_9GAMM
Hydrolase {ECO:0000313|EMBL:EIL96264.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
SCNpilot_expt_1000_bf_scaffold_1035_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

590..1207
DNA (618bp) protein (206aa)
Transcriptional regulator n=2 Tax=Rhodanobacter denitrificans RepID=I4WSU2_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1035_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1330..3114
DNA (1785bp) protein (595aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU3_9GAMM rbh
phosphoenolpyruvate carboxykinase (GTP) rbh
SCNpilot_expt_1000_bf_scaffold_1035_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3290..3835
DNA (546bp) protein (182aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU4_9GAMM rbh
RNA polymerase sigma factor, sigma-70 family rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG87779.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3832..4260
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1J7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93338.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1035_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4281..5189
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU6_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1035_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5273..6232)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87776.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6469..9369
DNA (2901bp) protein (967aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU8_9GAMM rbh
diguanylate cyclase (GGDEF) domain-containing protein rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG87775.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9379..10278)
DNA (900bp) protein (300aa)
Disulfide bond chaperone n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG89_9GAMM
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
disulfide bond chaperone
SCNpilot_expt_1000_bf_scaffold_1035_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10425..11090
DNA (666bp) protein (222aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Rhodanobacter denitrificans RepID=U3GKL7_9GAMM
monofunctional biosynthetic peptidoglycan transglycosylase
SCNpilot_expt_1000_bf_scaffold_1035_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11175..11603
DNA (429bp) protein (143aa)
Putative signal-transduction protein containing cAMP-binding and CBS domains n=1 Tax=Rhodanobacter denitrificans RepID=I4WSV1_9GAMM
putative signal-transduction protein containing cAMP-binding and CBS domains
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1035_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11632..12990)
DNA (1359bp) protein (453aa)
ATP/ADP translocase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1J0_9GAMM rbh
ATP/ADP translocase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1035_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13016..14599
DNA (1584bp) protein (528aa)
Choline dehydrogenase-like flavoprotein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAZ7_9GAMM rbh
choline dehydrogenase-like flavoprotein rbh
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:AGG87770.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14709..16586)
DNA (1878bp) protein (626aa)
Peptidase M48 Ste24p n=1 Tax=Rhodanobacter denitrificans RepID=I4WSV4_9GAMM rbh
Zn-dependent protease with chaperone function {ECO:0000313|EMBL:AGG87769.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Zn-dependent protease with chaperone function rbh
SCNpilot_expt_1000_bf_scaffold_1035_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16637..17224)
DNA (588bp) protein (196aa)
LemA family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VU05_9GAMM rbh
LemA family protein {ECO:0000313|EMBL:EIL90696.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1035_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17280..18560
DNA (1281bp) protein (427aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1I6_9GAMM rbh
Beta-lactamase {ECO:0000313|EMBL:EIL93327.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
penicillin-binding protein, beta-lactamase class C rbh
SCNpilot_expt_1000_bf_scaffold_1035_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18837..19856)
DNA (1020bp) protein (340aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIX9_9GAMM rbh
TonB family protein rbh
TonB family protein {ECO:0000313|EMBL:AGG87766.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20188..20505)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG80_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIL98471.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_1000_bf_scaffold_1035_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21349..21744)
DNA (396bp) protein (132aa)
Glycine cleavage system H protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1I3_9GAMM
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_1035_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21829..22908)
DNA (1080bp) protein (360aa)
aminomethyltransferase (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WSW0_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1035_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22988..24856)
DNA (1869bp) protein (623aa)
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein {ECO:0000313|EMBL:EIL90689.1}; EC=2.7.1.25 {ECO:0000313|EMBL:EIL90689.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
adenylylsulfate kinase (EC:2.7.7.4 2.7.1.25)
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTZ8_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1035_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24856..25767)
DNA (912bp) protein (304aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4) rbh
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WSW2_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1035_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26015..27415)
DNA (1401bp) protein (467aa)
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit (EC:6.3.5.-) rbh
Amidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1I1_9GAMM rbh
Amidase {ECO:0000313|EMBL:EIL93322.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1035_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27752..29362
DNA (1611bp) protein (537aa)
Flavoprotein-ubiquinone oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1I0_9GAMM rbh
Flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:EIL93321.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
flavin-dependent dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_1035_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29523..30146)
DNA (624bp) protein (208aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NE33_9GAMM rbh
putative glycosyltransferase rbh
Putative glycosyltransferase {ECO:0000313|EMBL:AGG87758.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30411..31127)
DNA (717bp) protein (239aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND36_9GAMM rbh
putative glycosyltransferase rbh
Putative glycosyltransferase {ECO:0000313|EMBL:AGG87757.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31073..31399)
DNA (327bp) protein (109aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND36_9GAMM
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AGG87757.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1035_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31670..32416
DNA (747bp) protein (249aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1H7_9GAMM rbh
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EIL93318.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
electron transfer flavoprotein, beta subunit rbh
SCNpilot_expt_1000_bf_scaffold_1035_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32573..33517
DNA (945bp) protein (315aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1H6_9GAMM rbh
electron transfer flavoprotein, alpha subunit rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1035_30
Acetobacter cibinongensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33967..34974
DNA (1008bp) protein (336aa)
Membrane protein-like protein n=1 Tax=Burkholderia sp. H160 RepID=B5WRP0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAN59974.1}; TaxID=1231339 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter cibinongensis 4H-1.;"
hypothetical protein
Displaying items 1-30 of 41 in total

View Taxonomy