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SCNpilot_expt_1000_bf_scaffold_1040

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1040_1
unknown

Not on your lists

comp(1..111)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1040_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(108..1058)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDA7F rbh
putative ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein rbh
Tax=RBG_16_Gemmatimonadetes_66_8_curated
SCNpilot_expt_1000_bf_scaffold_1040_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1178..1804)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WW65_9GAMM rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:AGG90512.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1040_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1862..2188)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99009.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1040_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2304..2885
DNA (582bp) protein (194aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WW67_9GAMM rbh
RNA polymerase sigma factor, sigma-70 family rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG90514.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1040_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2882..3346
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NHV6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90515.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1040_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3443..4243)
DNA (801bp) protein (267aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|SAAS:SAAS00018107}; EC=1.17.1.8 {ECO:0000256|SAAS:SAAS00018107};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dihydrodipicolinate reductase (EC:1.3.1.26) rbh
Dihydrodipicolinate reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY4_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1040_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4347..5198)
DNA (852bp) protein (284aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Dihydrolipoamide dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY5_9GAMM
SCNpilot_expt_1000_bf_scaffold_1040_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5162..6187)
DNA (1026bp) protein (342aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Dihydrolipoamide dehydrogenase n=2 Tax=Rhodanobacter denitrificans RepID=I4WW71_9GAMM
SCNpilot_expt_1000_bf_scaffold_1040_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6203..7552)
DNA (1350bp) protein (450aa)
Dihydrolipoamide acetyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY6_9GAMM rbh
Dihydrolipoamide acetyltransferase {ECO:0000313|EMBL:EIL97677.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form rbh
SCNpilot_expt_1000_bf_scaffold_1040_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7785..8669
DNA (885bp) protein (295aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W226_9GAMM rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL93517.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type multidrug transport system, ATPase component rbh
SCNpilot_expt_1000_bf_scaffold_1040_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8693..12277
DNA (3585bp) protein (1195aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMM4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL88465.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
aminopeptidase N rbh
SCNpilot_expt_1000_bf_scaffold_1040_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12287..13129)
DNA (843bp) protein (281aa)
Small-conductance mechanosensitive channel n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY9_9GAMM rbh
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:EIL97680.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
small-conductance mechanosensitive channel rbh
SCNpilot_expt_1000_bf_scaffold_1040_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13205..13507)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W229_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93520.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF2845)
SCNpilot_expt_1000_bf_scaffold_1040_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13554..14129)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDJ9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1040_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14209..14994)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WW83_9GAMM
Protein of unknown function (DUF2884)
Uncharacterized protein {ECO:0000313|EMBL:AGG90531.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1040_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15115..15993)
DNA (879bp) protein (293aa)
TonB family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W233_9GAMM
TonB family protein {ECO:0000313|EMBL:EIL93524.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane transport energization protein TonB
SCNpilot_expt_1000_bf_scaffold_1040_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16068..16619)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003049958
Uncharacterized protein {ECO:0000313|EMBL:AIF46744.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1040_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16619..17149)
DNA (531bp) protein (177aa)
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR37_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1040_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17255..17713)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WW86_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1040_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17942..18358
DNA (417bp) protein (139aa)
Universal stress protein UspA-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WW87_9GAMM
universal stress protein UspA-like protein
Universal stress protein UspA-like protein {ECO:0000313|EMBL:AGG90535.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1040_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18373..18822)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDK6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97547.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1040_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18891..19619)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE02_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97693.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1040_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19695..19997)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W241_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93532.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF3247)
SCNpilot_expt_1000_bf_scaffold_1040_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20127..21044
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W243_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93534.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1040_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21261..21932
DNA (672bp) protein (224aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WW95_9GAMM rbh
glutathione S-transferase rbh
Glutathione S-transferase {ECO:0000313|EMBL:AGG90543.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1040_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22024..22365
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W245_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93536.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1040_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22474..24072
DNA (1599bp) protein (533aa)
Major facilitator transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE10_9GAMM rbh
Major facilitator transporter {ECO:0000313|EMBL:EIL97701.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sugar phosphate permease rbh
SCNpilot_expt_1000_bf_scaffold_1040_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24128..26854)
DNA (2727bp) protein (909aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pyruvate dehydrogenase E1 component n=1 Tax=Rhodanobacter denitrificans RepID=I4WW98_9GAMM rbh
pyruvate dehydrogenase E1 component, homodimeric type rbh
Displaying 29 items

View Taxonomy