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SCNpilot_expt_1000_bf_scaffold_1126

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1126_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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251..811
DNA (561bp) protein (187aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNA pyrophosphohydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFL2_9GAMM rbh
NTP pyrophosphohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_1126_2
unknown

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912..1694
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1126_3
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1694..4516
DNA (2823bp) protein (941aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5X3_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL27386.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_1126_4
unknown

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4521..5168
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1126_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5271..5468
DNA (198bp) protein (66aa)
Bacterioferritin-associated ferredoxin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFL1_9GAMM
bacterioferritin-associated ferredoxin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1126_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5578..6048
DNA (471bp) protein (157aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Bacterioferritin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLQ8_9GAMM
bacterioferritin
SCNpilot_expt_1000_bf_scaffold_1126_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6163..6915
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2H4_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1126_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6902..7336
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2H3_9GAMM
Integral membrane protein CcmA involved in cell shape determination
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1126_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7383..7751
DNA (369bp) protein (123aa)
Iron-sulfur cluster insertion protein ErpA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK7_9GAMM
Iron-sulfur cluster assembly accessory protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1126_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7762..8736
DNA (975bp) protein (325aa)
Zn-finger containing NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ04_9GAMM rbh
Zn-finger containing NTP pyrophosphohydrolase rbh
Zn-finger containing NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL98247.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_1000_bf_scaffold_1126_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8809..9450
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000366A38F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87232.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1126_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9518..10387
DNA (870bp) protein (290aa)
Membrane protein required for beta-lactamase induction n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK4_9GAMM rbh
Membrane protein required for beta-lactamase induction {ECO:0000313|EMBL:EIL98245.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
membrane protein required for beta-lactamase induction rbh
SCNpilot_expt_1000_bf_scaffold_1126_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10463..12337)
DNA (1875bp) protein (625aa)
Fatty acid permease / acyltransferase fusion protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK3_9GAMM rbh
Fatty acid permease / acyltransferase fusion protein {ECO:0000313|EMBL:EIL98244.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_1126_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12621..13196
DNA (576bp) protein (192aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NJ09_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90889.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1126_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13249..15396)
DNA (2148bp) protein (716aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycyl-tRNA synthetase beta chain (EC:6.1.1.14) rbh
Glycine--tRNA ligase beta subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK0_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1126_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15393..16310)
DNA (918bp) protein (306aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glycyl-tRNA synthetase alpha chain (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQQ0_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1126_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16410..18230
DNA (1821bp) protein (607aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRY2_9GAMM rbh
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:EIL89973.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB rbh
SCNpilot_expt_1000_bf_scaffold_1126_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18258..18980
DNA (723bp) protein (241aa)
Glutamine amidotransferase {ECO:0000313|EMBL:EIL98238.1}; EC=6.3.5.2 {ECO:0000313|EMBL:EIL98238.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glutamine amidotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFJ7_9GAMM rbh
GMP synthase family protein rbh
SCNpilot_expt_1000_bf_scaffold_1126_19
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18988..19752)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRY0_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Displaying 19 items

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