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SCNpilot_expt_1000_bf_scaffold_1205

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1205_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..156)
DNA (156bp) protein (52aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NGH7_9GAMM
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AGG90040.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(171..677)
DNA (507bp) protein (169aa)
Chemotaxis signal transduction protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYR7_9GAMM
chemotaxis signal transduction protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1205_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(868..2580)
DNA (1713bp) protein (571aa)
Methyl-accepting chemotaxis protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NIY2_9GAMM rbh
methyl-accepting chemotaxis protein rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AGG90042.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2729..4768)
DNA (2040bp) protein (680aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Chemotaxis protein histidine kinase-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBL0_9GAMM rbh
chemotaxis protein histidine kinase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_1205_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4779..5141)
DNA (363bp) protein (121aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS1_9GAMM
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EIL92362.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_1205_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5156..5491)
DNA (336bp) protein (112aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Rhodanobacter denitrificans RepID=M4NGI3_9GAMM
anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:AGG90045.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5703..6902
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL96848.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Flagellar hook-length control protein FliK rbh
SCNpilot_expt_1000_bf_scaffold_1205_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6899..7150
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96847.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1205_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7370..7723)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96846.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF2802)
SCNpilot_expt_1000_bf_scaffold_1205_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7713..8189)
DNA (477bp) protein (159aa)
Chemotaxis signal transduction protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK4_9GAMM
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EIL96845.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chemotaxis signal transduction protein
SCNpilot_expt_1000_bf_scaffold_1205_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8227..9243)
DNA (1017bp) protein (339aa)
Flagellar motor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NGI6_9GAMM rbh
flagellar motor protein rbh
Flagellar motor protein {ECO:0000313|EMBL:AGG90050.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9240..9980)
DNA (741bp) protein (247aa)
Flagellar motor component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS8_9GAMM rbh
Flagellar motor component {ECO:0000313|EMBL:EIL92369.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar motor component rbh
SCNpilot_expt_1000_bf_scaffold_1205_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9985..11859)
DNA (1875bp) protein (625aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Chemotaxis protein histidine kinase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIZ2_9GAMM rbh
chemotaxis protein histidine kinase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_1205_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11873..12517)
DNA (645bp) protein (215aa)
Protein phosphatase CheZ {ECO:0000256|PIRNR:PIRNR002884}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR002884};; Chemotaxis protein CheZ {ECO:0000256|PIRNR:PIRNR002884}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY3_9GAMM rbh
chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_1205_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12514..12936)
DNA (423bp) protein (141aa)
Response regulator receiver protein n=2 Tax=Rhodanobacter denitrificans RepID=I4WYY4_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EIL92372.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
SCNpilot_expt_1000_bf_scaffold_1205_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12980..13708)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor FliA n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY5_9GAMM rbh
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG rbh
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13705..14646)
DNA (942bp) protein (314aa)
Site-determining protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY6_9GAMM rbh
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ATPase involved in chromosome partitioning rbh
SCNpilot_expt_1000_bf_scaffold_1205_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14661..15947)
DNA (1287bp) protein (429aa)
Flagellar biosynthetic protein FlhF n=1 Tax=Rhodanobacter denitrificans RepID=U3GL36_9GAMM rbh
flagellar biosynthetic protein FlhF rbh
Flagellar biosynthetic protein FlhF {ECO:0000313|EMBL:AGG90057.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16120..18213)
DNA (2094bp) protein (698aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY8_9GAMM rbh
flagellar biosynthesis protein FlhA rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:AGG90058.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18249..19115)
DNA (867bp) protein (289aa)
Flagellar biosynthetic protein FlhB n=1 Tax=Rhodanobacter denitrificans RepID=U3GKL9_9GAMM rbh
flagellar biosynthetic protein FlhB rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1205_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19328..20095)
DNA (768bp) protein (256aa)
Flagellar biosynthetic protein FliR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC9_9GAMM rbh
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
flagellar biosynthetic protein FliR rbh
SCNpilot_expt_1000_bf_scaffold_1205_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20092..20361)
DNA (270bp) protein (90aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Rhodanobacter denitrificans RepID=U3GLL4_9GAMM
flagellar biosynthetic protein FliQ
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1205_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20531..21268)
DNA (738bp) protein (246aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1205_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21322..22068)
DNA (747bp) protein (249aa)
Flagellar biosynthesis protein FliP n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYC0_9GAMM rbh
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:EIL92211.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar biosynthetic protein FliP rbh
SCNpilot_expt_1000_bf_scaffold_1205_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22065..22496)
DNA (432bp) protein (144aa)
Flagellar biosynthetic protein FliO n=2 Tax=Rhodanobacter denitrificans RepID=U3GL38_9GAMM
flagellar biosynthetic protein FliO
Flagellar biosynthetic protein FliO {ECO:0000313|EMBL:AGG90063.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22585..22929)
DNA (345bp) protein (115aa)
Flagellar motor switch protein FliN n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBD3_9GAMM
Flagellar motor switch protein FliN {ECO:0000313|EMBL:EIL96774.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
flagellar motor switch protein FliN
SCNpilot_expt_1000_bf_scaffold_1205_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22926..23942)
DNA (1017bp) protein (339aa)
Flagellar motor switch protein FliM n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYC3_9GAMM rbh
flagellar motor switch protein FliM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1205_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23958..24521)
DNA (564bp) protein (188aa)
Flagellar basal body-associated protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBD5_9GAMM
Flagellar basal body-associated protein {ECO:0000313|EMBL:EIL96776.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
flagellar basal body-associated protein
SCNpilot_expt_1000_bf_scaffold_1205_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24812..25972)
DNA (1161bp) protein (387aa)
Flagellar hook-length control protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ05_9GAMM
flagellar hook-length control protein
Flagellar hook-length control protein {ECO:0000313|EMBL:AGG90067.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1205_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26055..26396)
DNA (342bp) protein (114aa)
Flagellar biosynthesis chaperone n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYC6_9GAMM
Flagellar biosynthesis chaperone {ECO:0000313|EMBL:EIL92217.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar export protein FliJ
Displaying items 1-30 of 32 in total

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