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SCNpilot_expt_1000_bf_scaffold_1219

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1219_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..455
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003789DAF
Uncharacterized protein {ECO:0000313|EMBL:AHX16316.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
methyltransferase type 11
SCNpilot_expt_1000_bf_scaffold_1219_2
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

727..1779
DNA (1053bp) protein (351aa)
Glycosyl transferase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZIH5_TERRK
glycosyl transferase family protein
Glycosyl transferase {ECO:0000313|EMBL:AFL89043.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_expt_1000_bf_scaffold_1219_3
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1776..2966
DNA (1191bp) protein (397aa)
Cellulose biosynthesis protein CelD n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LIE7_HALO1
Uncharacterized protein {ECO:0000313|EMBL:EYF06260.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
cellulose biosynthesis protein CelD
SCNpilot_expt_1000_bf_scaffold_1219_4
unknown

Not on your lists

comp(3000..3656)
DNA (657bp) protein (219aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1219_5
unknown

Not on your lists

3803..3946
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1219_6
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4106..4735
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003074C75
glycosyl transferase family protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_1000_bf_scaffold_1219_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4746..6446)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVT1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91322.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1219_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6443..7435)
DNA (993bp) protein (331aa)
UDP-galactose 4-epimerase (EC:5.1.3.2) rbh
UDP-galactose 4-epimerase {ECO:0000313|EMBL:AGG89266.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AGG89266.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
UDP-galactose 4-epimerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXE1_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1219_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7432..8262)
DNA (831bp) protein (277aa)
Alpha/beta superfamily hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVT0_9GAMM
Alpha/beta superfamily hydrolase {ECO:0000313|EMBL:EIL91321.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
alpha/beta superfamily hydrolase
SCNpilot_expt_1000_bf_scaffold_1219_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8259..9035)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVS9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91320.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1219_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9039..10346)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVS8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX16318.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_1000_bf_scaffold_1219_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10497..11288)
DNA (792bp) protein (264aa)
Polysaccharide biosynthesis protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVS7_9GAMM rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EIL91318.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
polysaccharide biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_1219_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11285..12838)
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVS6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91317.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1219_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12872..13492)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003626173 rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHX13683.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
wza; polysaccharide export protein; K01991 polysaccharide export outer membrane protein
SCNpilot_expt_1000_bf_scaffold_1219_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13646..14923
DNA (1278bp) protein (426aa)
Capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W267_9GAMM
Capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati {ECO:0000313|EMBL:EIL93558.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nucleotide sugar dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1219_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14988..16010
DNA (1023bp) protein (341aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ08_9GAMM rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIL99449.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleoside-diphosphate-sugar epimerase rbh
SCNpilot_expt_1000_bf_scaffold_1219_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16060..16275)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHC7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98868.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF2909)
SCNpilot_expt_1000_bf_scaffold_1219_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16335..17063
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHX8_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1219_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17098..17670
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHC5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98866.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1219_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17670..18830
DNA (1161bp) protein (387aa)
Cytochrome oxidase assembly protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ82_9GAMM rbh
Cytochrome oxidase assembly protein {ECO:0000313|EMBL:EIL89373.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
uncharacterized protein required for cytochrome oxidase assembly
SCNpilot_expt_1000_bf_scaffold_1219_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18836..19738
DNA (903bp) protein (301aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Protoheme IX farnesyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W3E7_9GAMM
protoheme IX farnesyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_1219_22
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19839..20597)
DNA (759bp) protein (253aa)
Phosphopantetheinyl transferase n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TGU6_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KGI79267.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
phosphopantetheinyl transferase
SCNpilot_expt_1000_bf_scaffold_1219_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21051..21278
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W304_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1219_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21380..22246
DNA (867bp) protein (289aa)
Magnesium-transporting ATPase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W303_9GAMM
Magnesium-transporting ATPase {ECO:0000313|EMBL:EIL93844.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
magnesium-translocating P-type ATPase
SCNpilot_expt_1000_bf_scaffold_1219_25
R_OD1_Uhrbacteria_60_10, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22212..23360)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Anaerostipes sp. CAG:276 RepID=R6QG82_9FIRM
Tax=RIFCSPHIGHO2_02_FULL_OD1_Uhrbacteria_60_10_curated
SCNpilot_expt_1000_bf_scaffold_1219_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23362..23976
DNA (615bp) protein (205aa)
Magnesium-transporting ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ78_9GAMM
magnesium-translocating P-type ATPase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1219_27
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24033..24818)
DNA (786bp) protein (262aa)
transcriptional regulator n=1 Tax=Nevskia ramosa RepID=UPI0003B68D10 rbh
two-component sensor protein histidine protein kinase, putative rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_1000_bf_scaffold_1219_28
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24815..25900)
DNA (1086bp) protein (362aa)
histidine kinase n=1 Tax=Nevskia ramosa RepID=UPI0003B4FF7B rbh
transmembrane sensor histidine kinase protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_1219_29
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26093..26812
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4HSG7_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_1219_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26940..27995)
DNA (1056bp) protein (352aa)
Sodium/bile acid symporter family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ77_9GAMM rbh
putative Na+-dependent transporter rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 36 in total

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