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SCNpilot_expt_1000_bf_scaffold_1363

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1363_1
unknown

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1..72
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1363_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(128..337)
DNA (210bp) protein (70aa)
Cold acclimation protein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC31_9GAMM
Cold acclimation protein B {ECO:0000313|EMBL:EIL97022.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cold shock protein
SCNpilot_expt_1000_bf_scaffold_1363_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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555..1322
DNA (768bp) protein (256aa)
Exodeoxyribonuclease III (EC:3.1.11.2) rbh
Exodeoxyribonuclease III n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUE6_9GAMM rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:EIL90837.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1363_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1328..2005
DNA (678bp) protein (226aa)
YecA family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC8_9GAMM rbh
yecA family protein rbh
YecA family protein {ECO:0000313|EMBL:AGG90984.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1363_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2093..2839
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NMZ1_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG90983.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1363_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2943..3776
DNA (834bp) protein (278aa)
Pirin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC35_9GAMM rbh
Pirin {ECO:0000313|EMBL:EIL97026.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Pirin-related protein rbh
SCNpilot_expt_1000_bf_scaffold_1363_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3861..4682)
DNA (822bp) protein (274aa)
Sugar ABC transporter permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUF5_9GAMM rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:EIL90846.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family rbh
SCNpilot_expt_1000_bf_scaffold_1363_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4679..5557)
DNA (879bp) protein (293aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family n=1 Tax=Rhodanobacter denitrificans RepID=I4WNB6_9GAMM
carbohydrate ABC transporter membrane protein 1, CUT1 family
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:AGG90980.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1363_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5554..6834)
DNA (1281bp) protein (427aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUF7_9GAMM
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:EIL90848.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family
SCNpilot_expt_1000_bf_scaffold_1363_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6831..8324)
DNA (1494bp) protein (498aa)
Tat pathway signal protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003493E52
Uncharacterized protein {ECO:0000313|EMBL:EIL97030.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1363_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8389..9972)
DNA (1584bp) protein (528aa)
tryptophan halogenase; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7] rbh
Tryptophan halogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC40_9GAMM rbh
Tryptophan halogenase {ECO:0000313|EMBL:EIL97031.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_1000_bf_scaffold_1363_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10013..13060)
DNA (3048bp) protein (1016aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00035F80E0 rbh
Membrane protein {ECO:0000313|EMBL:AIF46207.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent outer membrane receptor rbh
SCNpilot_expt_1000_bf_scaffold_1363_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13093..14112)
DNA (1020bp) protein (340aa)
LacI family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC42_9GAMM rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL97033.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1363_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14684..15139
DNA (456bp) protein (152aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Rhodanobacter denitrificans RepID=I4WNC1_9GAMM
membrane protease subunit, stomatin/prohibitin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1363_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15297..15926
DNA (630bp) protein (210aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC44_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1363_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16017..16193)
DNA (177bp) protein (59aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Beta-glucosidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNC3_9GAMM
beta-galactosidase
Displaying 16 items

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