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SCNpilot_expt_1000_bf_scaffold_1421

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1421_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23..607)
DNA (585bp) protein (195aa)
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ02_9GAMM rbh
response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein rbh
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein {ECO:0000313|EMBL:AGG88053.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1421_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(678..1970)
DNA (1293bp) protein (431aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ01_9GAMM rbh
signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1421_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2037..2474)
DNA (438bp) protein (146aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8M5_9GAMM
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL95816.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_expt_1000_bf_scaffold_1421_4
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

2820..3653
DNA (834bp) protein (278aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY11804.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_1421_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3872..4243
DNA (372bp) protein (124aa)
diacylglycerol kinase (EC:2.7.1.107)
Diacylglycerol kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV35_9GAMM
Diacylglycerol kinase {ECO:0000313|EMBL:EIL91076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1421_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4317..4937
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV34_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1421_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4939..5802
DNA (864bp) protein (288aa)
Beta-propeller domain-containing protein, methanol dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYZ7_9GAMM rbh
beta-propeller domain-containing protein, methanol dehydrogenase rbh
Beta-propeller domain-containing protein, methanol dehydrogenase {ECO:0000313|EMBL:AGG88058.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1421_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5804..6307
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8M1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92601.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1421_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(6175..7284)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 RepID=D4T5W5_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KIJ71847.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_1421_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7472..8482)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJ02_9GAMM rbh
TIGR00266 family protein rbh
TIGR00266 family protein {ECO:0000313|EMBL:AGG88063.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1421_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8612..9427
DNA (816bp) protein (272aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thymidylate synthase (EC:2.1.1.45) rbh
Thymidylate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCF1_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1421_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9519..10007
DNA (489bp) protein (163aa)
dihydrofolate reductase (EC:1.5.1.3) rbh
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Dihydrofolate reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBN4_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1421_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10007..10396
DNA (390bp) protein (130aa)
thiamine monophosphate synthase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
Thiamine monophosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92595.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1421_14
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..11103)
DNA (654bp) protein (218aa)
Uncharacterized protein n=3 Tax=Azotobacter vinelandii RepID=M9Y2D6_AZOVI
hypothetical protein; K07491 putative transposase
Uncharacterized protein {ECO:0000313|EMBL:AGK21263.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCNpilot_expt_1000_bf_scaffold_1421_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11147..11761)
DNA (615bp) protein (205aa)
Dephospho-CoA kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ8_9GAMM rbh
dephospho-CoA kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1421_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11758..12615)
DNA (858bp) protein (286aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type 4 prepilin peptidase 1 (EC:3.4.23.43) rbh
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV21_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1421_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12752..13447)
DNA (696bp) protein (232aa)
Type II secretory pathway, component PulF n=1 Tax=Rhodanobacter denitrificans RepID=M4NBT7_9GAMM
type II secretory pathway, component PulF
Type II secretory pathway, component PulF {ECO:0000313|EMBL:AGG88069.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1421_18
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13672..13920
DNA (249bp) protein (83aa)
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_expt_1000_bf_scaffold_1421_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14151..15830)
DNA (1680bp) protein (560aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Rhodanobacter denitrificans RepID=M4NBN9_9GAMM rbh
type IV-A pilus assembly ATPase PilB rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1421_20
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16075..17463)
DNA (1389bp) protein (463aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z891_9XANT rbh
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ETC86098.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
filamentation induced by cAMP protein fic rbh
SCNpilot_expt_1000_bf_scaffold_1421_21
unknown

Not on your lists

comp(17915..18193)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1421_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18358..18756
DNA (399bp) protein (133aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ1_9GAMM
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AGG88073.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1421_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18749..20002
DNA (1254bp) protein (418aa)
Group 1 glycosyl transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZW1_9GAMM rbh
Group 1 glycosyl transferase {ECO:0000313|EMBL:EIL92752.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
group 1 glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_1421_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19999..20760
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003809473 rbh
SAM-binding motif {ECO:0000313|EMBL:AIF47255.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative methyltransferase
SCNpilot_expt_1000_bf_scaffold_1421_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20781..21920)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000310A182 rbh
Group 1 glycosyl transferase {ECO:0000313|EMBL:AIF47256.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
group 1 glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_1421_26
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21923..22333)
DNA (411bp) protein (137aa)
Twitching motility protein PilT n=1 Tax=Advenella kashmirensis W13003 RepID=V8QLG6_9BURK
Twitching motility protein PilT {ECO:0000313|EMBL:ETF00806.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
PilT protein domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1421_27
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22330..22599)
DNA (270bp) protein (90aa)
Prevent-host-death protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QNB4_9BURK
Prevent-host-death protein {ECO:0000313|EMBL:ETF00805.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
prevent-host-death family protein
SCNpilot_expt_1000_bf_scaffold_1421_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22657..23769)
DNA (1113bp) protein (371aa)
UDP-galactopyranose mutase (EC:5.4.99.9); K01854 UDP-galactopyranose mutase [EC:5.4.99.9] rbh
UDP-galactopyranose mutase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLZ1_9GAMM rbh
UDP-galactopyranose mutase {ECO:0000313|EMBL:EIL88232.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1421_29
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23793..24821)
DNA (1029bp) protein (343aa)
Glycosyl transferase family 2 n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWR7_NITHN rbh
family 2 glycosyl transferase rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADE13798.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_1000_bf_scaffold_1421_30
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24818..25906)
DNA (1089bp) protein (363aa)
group 1 family glycosyl transferase (EC:2.4.1.-); K00754 [EC:2.4.1.-]
Glycosyl transferase family 1 n=1 Tax=uncultured gamma proteobacterium RepID=H5SE50_9GAMM rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:BAL54436.1}; TaxID=86473 species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium.;"
Displaying items 1-30 of 36 in total

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