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SCNpilot_expt_1000_bf_scaffold_1448

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1448_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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321..632
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=4 Tax=Rhodanobacter RepID=I4WKR2_9GAMM
SSU ribosomal protein S10P
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1448_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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638..1279
DNA (642bp) protein (214aa)
50S ribosomal protein L3 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ65_9GAMM rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L3P rbh
SCNpilot_expt_1000_bf_scaffold_1448_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1291..1893
DNA (603bp) protein (201aa)
50S ribosomal protein L4 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM72_9GAMM rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
50S ribosomal protein L4, bacterial/organelle rbh
SCNpilot_expt_1000_bf_scaffold_1448_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1890..2183
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM73_9GAMM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ribosomal protein L23
SCNpilot_expt_1000_bf_scaffold_1448_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2201..3025
DNA (825bp) protein (275aa)
50S ribosomal protein L2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKR6_9GAMM rbh
LSU ribosomal protein L2P rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1448_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3038..3310
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=2 Tax=Rhodanobacter RepID=I4VM75_9GAMM
SSU ribosomal protein S19P
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1448_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3310..3645
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM76_9GAMM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
LSU ribosomal protein L22P
SCNpilot_expt_1000_bf_scaffold_1448_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3863..4390
DNA (528bp) protein (176aa)
30S ribosomal protein S3 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ59_9GAMM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SSU ribosomal protein S3P
SCNpilot_expt_1000_bf_scaffold_1448_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4403..4816
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ58_9GAMM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L16P
SCNpilot_expt_1000_bf_scaffold_1448_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4816..5001
DNA (186bp) protein (62aa)
50S ribosomal protein L29 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ57_9GAMM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L29P
SCNpilot_expt_1000_bf_scaffold_1448_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5014..5274
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL60_9GAMM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SSU ribosomal protein S17P
SCNpilot_expt_1000_bf_scaffold_1448_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5290..5658
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=3 Tax=Rhodanobacter RepID=I4WKS3_9GAMM
LSU ribosomal protein L14P
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1448_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5674..5988
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKS4_9GAMM
ribosomal protein L24, bacterial/organelle
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1448_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6000..6539
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM83_9GAMM rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 rbh
SCNpilot_expt_1000_bf_scaffold_1448_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6603..6908
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM84_9GAMM
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ribosomal protein S14
SCNpilot_expt_1000_bf_scaffold_1448_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7133..7528
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ51_9GAMM
ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1448_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7540..8067
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ50_9GAMM rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L6P rbh
SCNpilot_expt_1000_bf_scaffold_1448_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8170..8523
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKS9_9GAMM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
LSU ribosomal protein L18P
SCNpilot_expt_1000_bf_scaffold_1448_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8675..9184
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM88_9GAMM rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SSU ribosomal protein S5P rbh
SCNpilot_expt_1000_bf_scaffold_1448_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9177..9374
DNA (198bp) protein (66aa)
50S ribosomal protein L30 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT1_9GAMM
LSU ribosomal protein L30P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1448_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9380..9811
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK7_9GAMM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LSU ribosomal protein L15P
SCNpilot_expt_1000_bf_scaffold_1448_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9816..11138
DNA (1323bp) protein (441aa)
Protein translocase subunit SecY n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL49_9GAMM rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
preprotein translocase, SecY subunit rbh
SCNpilot_expt_1000_bf_scaffold_1448_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11264..11620
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL48_9GAMM
30S ribosomal protein S13
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1448_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11760..12077
DNA (318bp) protein (106aa)
30S ribosomal protein S11 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL0_9GAMM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_1000_bf_scaffold_1448_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12145..12771
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM94_9GAMM rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SSU ribosomal protein S4P rbh
SCNpilot_expt_1000_bf_scaffold_1448_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12788..13786
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Rhodanobacter RepID=I4WKT7_9GAMM
SCNpilot_expt_1000_bf_scaffold_1448_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13991..14374
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT8_9GAMM
LSU ribosomal protein L17P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1448_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14550..15053
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF1C2
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
disulfide bond formation protein DsbB
SCNpilot_expt_1000_bf_scaffold_1448_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15050..16450
DNA (1401bp) protein (467aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKU0_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1448_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16463..18070)
DNA (1608bp) protein (536aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF09_9GAMM rbh
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit rbh
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:AGG88163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 36 in total

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