ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1514

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1514_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139..531)
DNA (393bp) protein (131aa)
Ribosome-associated heat shock protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY96_9GAMM
ribosome-associated heat shock protein implicated in recycling of 50S subunit
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1514_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(537..1127)
DNA (591bp) protein (197aa)
Response regulator receiver protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY95_9GAMM
response regulator containing a CheY-like receiver domain and a GGDEF domain
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1514_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1209..2153)
DNA (945bp) protein (315aa)
Putative permease n=1 Tax=Rhodanobacter denitrificans RepID=I4WY94_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIM03091.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease rbh
SCNpilot_expt_1000_bf_scaffold_1514_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2211..3422
DNA (1212bp) protein (404aa)
Putative homoserine kinase type II (Protein kinase fold) n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ57_9GAMM rbh
putative homoserine kinase type II (protein kinase fold) rbh
Putative homoserine kinase type II (Protein kinase fold) {ECO:0000313|EMBL:AGG89723.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1514_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3571..5748
DNA (2178bp) protein (726aa)
TonB-dependent siderophore receptor n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZW8_9GAMM rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EIL92759.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
TonB-dependent siderophore receptor rbh
SCNpilot_expt_1000_bf_scaffold_1514_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5745..6314
DNA (570bp) protein (190aa)
aminotransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000345FC01 rbh
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EIL94054.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nicotinamide mononucleotide transporter PnuC rbh
SCNpilot_expt_1000_bf_scaffold_1514_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6377..7081
DNA (705bp) protein (235aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 PF7_9GAMM">RepID=I4WPF7_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EIM01349.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutathione S-transferase rbh
SCNpilot_expt_1000_bf_scaffold_1514_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7175..7801
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY87_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1514_9
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7849..8949)
DNA (1101bp) protein (367aa)
Ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84]
Ste24 endopeptidase {ECO:0000313|EMBL:ACY18025.1}; EC=3.4.24.84 {ECO:0000313|EMBL:ACY18025.1};; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Ste24 endopeptidase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZP6_HALO1
SCNpilot_expt_1000_bf_scaffold_1514_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9252..9929
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94752.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1514_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10053..12143
DNA (2091bp) protein (697aa)
endothelin-converting enzyme (EC:3.4.24.71)
Putative metalloendopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K9_9GAMM rbh
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL94750.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1514_12
unknown

Not on your lists

comp(12251..12805)
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1514_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12928..13887
DNA (960bp) protein (320aa)
endothelin-converting enzyme (EC:3.4.24.71)
Endothelin-converting enzyme {ECO:0000313|EMBL:AGG88270.1}; EC=3.4.24.71 {ECO:0000313|EMBL:AGG88270.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Endothelin-converting enzyme n=1 Tax=Rhodanobacter denitrificans RepID=M4NC77_9GAMM
SCNpilot_expt_1000_bf_scaffold_1514_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13919..14440
DNA (522bp) protein (174aa)
endothelin-converting enzyme (EC:3.4.24.71)
Putative metalloendopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K8_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1514_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14722..17058
DNA (2337bp) protein (779aa)
Catecholate siderophore receptor Fiu n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K7_9GAMM rbh
Catecholate siderophore receptor Fiu {ECO:0000313|EMBL:EIL94748.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
catecholate siderophore receptor Fiu; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_1000_bf_scaffold_1514_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17096..17776
DNA (681bp) protein (227aa)
PKHD-type hydroxylase ybiX; K07336 PKHD-type hydroxylase [EC:1.14.11.-] rbh
PKHD-type hydroxylase UU9_16436 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJJ0_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1514_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17847..20687
DNA (2841bp) protein (947aa)
RNA polymerase-associated protein RapA {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010031}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010033};; ATP-dependent helicase HepA {ECO:0000256|HAMAP-Rule:MF_01821}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNA polymerase-associated protein RapA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM34_9GAMM rbh
DNA/RNA helicase, superfamily II, SNF2 family rbh
SCNpilot_expt_1000_bf_scaffold_1514_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20757..21407)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJI8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL87379.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1514_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21561..22268)
DNA (708bp) protein (236aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM31_9GAMM
cell wall-associated hydrolase, invasion-associated protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1514_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22442..23176)
DNA (735bp) protein (245aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ2_9GAMM rbh
pyridoxal phosphate enzyme, YggS family rbh
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:AGG88265.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1514_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23289..24704)
DNA (1416bp) protein (472aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K1_9GAMM rbh
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EIL94742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase rbh
SCNpilot_expt_1000_bf_scaffold_1514_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24924..25262
DNA (339bp) protein (113aa)
Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Rhodanobacter denitrificans RepID=M4NF81_9GAMM
competence protein ComEA-like protein with helix-hairpin-helix repeat region
Competence protein ComEA-like protein with helix-hairpin-helix repeat region {ECO:0000313|EMBL:AGG88263.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1514_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25345..25824
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88262.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1514_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25831..26376
DNA (546bp) protein (182aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ6_9GAMM rbh
acetyltransferase, ribosomal protein N-acetylase rbh
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AGG88261.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1514_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26384..28006)
DNA (1623bp) protein (541aa)
Flavodoxin/nitric oxide synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ9_9GAMM rbh
Flavodoxin/nitric oxide synthase {ECO:0000313|EMBL:EIM00515.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sulfite reductase, alpha subunit (flavoprotein) rbh
SCNpilot_expt_1000_bf_scaffold_1514_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28298..29311)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Glaciecola arctica BSs20135 RepID=K6XC17_9ALTE rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1514_27
unknown

Not on your lists

comp(29479..30471)
DNA (993bp) protein (331aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1514_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30592..31287)
DNA (696bp) protein (232aa)
Type VI secretion ATPase, ClpV1 family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWY6_9GAMM
Type VI secretion ATPase, ClpV1 family protein {ECO:0000313|EMBL:EIL91727.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type VI secretion ATPase; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_1514_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31284..33314)
DNA (2031bp) protein (677aa)
Type VI secretion ATPase, ClpV1 family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S5_9GAMM
Type VI secretion ATPase, ClpV1 family protein {ECO:0000313|EMBL:EIL93066.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type VI secretion ATPase, ClpV1 family; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_1514_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33384..34406)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93065.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11895 type VI secretion system protein ImpH
Displaying items 1-30 of 41 in total

View Taxonomy