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SCNpilot_expt_1000_bf_scaffold_1720

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1720_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(37..543)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91966.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1720_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(561..3044)
DNA (2484bp) protein (828aa)
Type IV secretion/conjugal transfer ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM4_9GAMM rbh
Type IV secretion/conjugal transfer ATPase {ECO:0000313|EMBL:EIL91965.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type IV secretion/conjugal transfer ATPase; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_expt_1000_bf_scaffold_1720_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3098..3364)
DNA (267bp) protein (89aa)
Putative type IV secretion system transmembrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM3_9GAMM
Putative type IV secretion system transmembrane protein {ECO:0000313|EMBL:EIL91964.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system transmembrane protein; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_1720_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3399..3806)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034780F2
Putative type IV secretion system protein {ECO:0000313|EMBL:EIL91963.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system protein; K03197 type IV secretion system protein VirB2
SCNpilot_expt_1000_bf_scaffold_1720_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4002..4964)
DNA (963bp) protein (321aa)
Putative type IV secretion system conjugal protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM1_9GAMM rbh
Putative type IV secretion system conjugal protein {ECO:0000313|EMBL:EIL91962.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system conjugal protein; K03194 type IV secretion system protein VirB1
SCNpilot_expt_1000_bf_scaffold_1720_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4964..5995)
DNA (1032bp) protein (344aa)
VirB11 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM0_9GAMM rbh
VirB11 protein {ECO:0000313|EMBL:EIL91961.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB11; ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11); K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_1000_bf_scaffold_1720_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6024..7190)
DNA (1167bp) protein (389aa)
VirB10 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL9_9GAMM rbh
VirB10 protein {ECO:0000313|EMBL:EIL91960.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB10; VirB10 protein; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_expt_1000_bf_scaffold_1720_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7187..7954)
DNA (768bp) protein (256aa)
Type IV secretion system protein Virb9 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL8_9GAMM rbh
Type IV secretion system protein Virb9 {ECO:0000313|EMBL:EIL91959.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB9; VirB9 protein; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_expt_1000_bf_scaffold_1720_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7951..8808)
DNA (858bp) protein (286aa)
VirB8 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL7_9GAMM rbh
VirB8 protein {ECO:0000313|EMBL:EIL91958.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8); K03203 type IV secretion system protein VirB8
SCNpilot_expt_1000_bf_scaffold_1720_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8852..9481)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91957.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1720_11
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10166..12067
DNA (1902bp) protein (634aa)
Type IV secretion system protein VirD4 n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FKD8_9XANT rbh
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:ENZ93834.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
putative NTPase VagA; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_1000_bf_scaffold_1720_12
unknown

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12085..12303
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1720_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12764..13240)
DNA (477bp) protein (159aa)
Ribonuclease D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDD4_9GAMM
Ribonuclease D {ECO:0000313|EMBL:EIL97475.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease D
Displaying 13 items

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