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SCNpilot_expt_1000_bf_scaffold_1896

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1896_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..152
DNA (150bp) protein (50aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2D4_9GAMM
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EIL93625.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_1000_bf_scaffold_1896_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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300..599
DNA (300bp) protein (100aa)
Endonuclease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE60_9GAMM
Endonuclease {ECO:0000313|EMBL:EIL97751.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA/rRNA methyltransferase
SCNpilot_expt_1000_bf_scaffold_1896_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1283..1918
DNA (636bp) protein (212aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU5_9GAMM
SCNpilot_expt_1000_bf_scaffold_1896_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1888..2010
DNA (123bp) protein (41aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2D2_9GAMM
SCNpilot_expt_1000_bf_scaffold_1896_5
unknown

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comp(2368..2760)
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1896_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3273..4691
DNA (1419bp) protein (473aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Coproporphyrinogen-III oxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE57_9GAMM rbh
oxygen-independent coproporphyrinogen III oxidase rbh
SCNpilot_expt_1000_bf_scaffold_1896_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4727..5488
DNA (762bp) protein (254aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWJ4_9GAMM rbh
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EIL91585.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cAMP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1896_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5545..6306)
DNA (762bp) protein (254aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV9_9GAMM rbh
glycosyl transferase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1896_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6303..7094)
DNA (792bp) protein (264aa)
Beta-ketoacyl synthase family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NME1_9GAMM rbh
beta-ketoacyl synthase family protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1896_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7091..8296)
DNA (1206bp) protein (402aa)
3-oxoacyl-(Acyl carrier protein) synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV7_9GAMM rbh
3-oxoacyl-(acyl-carrier-protein) synthase rbh
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:AGG90817.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1896_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8373..9122
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV6_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG90816.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1896_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9218..10120
DNA (903bp) protein (301aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
coproporphyrinogen III oxidase (EC:1.3.3.3) rbh
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF93_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1896_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10208..10864)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF94_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98135.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1896_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11007..11750
DNA (744bp) protein (248aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xant
phosphoglycerate mutase (EC:5.4.2.1) rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2N3_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1896_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11847..12407
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF96_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98137.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1896_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12427..13743)
DNA (1317bp) protein (439aa)
N-acyl-L-amino acid amidohydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF97_9GAMM rbh
N-acyl-L-amino acid amidohydrolase {ECO:0000313|EMBL:EIL98138.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Metal-dependent amidase/aminoacylase/carboxypeptidase
SCNpilot_expt_1000_bf_scaffold_1896_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13839..14957)
DNA (1119bp) protein (373aa)
Putative ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMU9_9GAMM rbh
putative ATPase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1896_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14966..15268)
DNA (303bp) protein (101aa)
Alpha/beta family hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMU8_9GAMM
putative hydrolase of the alpha/beta superfamily
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1896_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15672..16262
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2N8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93729.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1896_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16527..17060)
DNA (534bp) protein (178aa)
Cytochrome c5 n=1 Tax=Rhodanobacter denitrificans RepID=M4NTI6_9GAMM
cytochrome c5
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1896_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17495..18712
DNA (1218bp) protein (406aa)
Membrane fusion protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFA3_9GAMM rbh
Membrane fusion protein {ECO:0000313|EMBL:EIL98144.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RND family efflux transporter, MFP subunit rbh
SCNpilot_expt_1000_bf_scaffold_1896_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18797..21739
DNA (2943bp) protein (981aa)
Acriflavin resistance protein D n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P1_9GAMM rbh
Acriflavin resistance protein D {ECO:0000313|EMBL:EIL93732.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cation/multidrug efflux pump rbh
SCNpilot_expt_1000_bf_scaffold_1896_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21690..22019
DNA (330bp) protein (110aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLB0_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL88001.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cation/multidrug efflux pump
SCNpilot_expt_1000_bf_scaffold_1896_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22180..25275
DNA (3096bp) protein (1032aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NMC4_9GAMM rbh
cation/multidrug efflux pump rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 24 items

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