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SCNpilot_expt_1000_bf_scaffold_1952

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1952_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..325
DNA (324bp) protein (108aa)
Alpha-glucosidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0B0_9GAMM
Alpha-glucosidase {ECO:0000313|EMBL:EIL92901.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
family 31 glycosyl hydrolase, alpha-glucosidase
SCNpilot_expt_1000_bf_scaffold_1952_2

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1494..1874
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q99IT3_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAK28608.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1952_3

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2733..3077
DNA (345bp) protein (115aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BHG9_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48227.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1952_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3372..4367)
DNA (996bp) protein (332aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NDC9_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG88719.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1952_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4474..5715)
DNA (1242bp) protein (414aa)
Subtilisin-like serine protease n=2 Tax=Rhodanobacter denitrificans RepID=M4ND99_9GAMM rbh
subtilisin-like serine protease rbh
Subtilisin-like serine protease {ECO:0000313|EMBL:AGG88720.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1952_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5837..6328
DNA (492bp) protein (164aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WY34_9GAMM rbh
RNA polymerase sigma factor, sigma-70 family rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG88721.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1952_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6325..7056
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99360.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1952_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7188..7589
DNA (402bp) protein (134aa)
Lactoylglutathione lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQH3_9GAMM
lactoylglutathione lyase-like lyase
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:AGG87608.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1952_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7745..8476
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPA0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89041.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Ion channel rbh
SCNpilot_expt_1000_bf_scaffold_1952_10
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8503..8928
DNA (426bp) protein (142aa)
Conserved domain protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PJH6_CELJU
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ACE84190.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
SCNpilot_expt_1000_bf_scaffold_1952_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9069..10616
DNA (1548bp) protein (516aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQW8_9GAMM rbh
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:EIL92900.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
beta-xylosidase rbh
SCNpilot_expt_1000_bf_scaffold_1952_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10654..11964)
DNA (1311bp) protein (437aa)
Tryptophan halogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A8_9GAMM rbh
Tryptophan halogenase {ECO:0000313|EMBL:EIL92899.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tryptophan halogenase
SCNpilot_expt_1000_bf_scaffold_1952_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12354..14774
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A995B rbh
TonB-dependent receptor {ECO:0000313|EMBL:AIF46622.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent receptor-like protein rbh
Displaying 13 items

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