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SCNpilot_expt_1000_bf_scaffold_1980

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1980_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(76..498)
DNA (423bp) protein (141aa)
DNA polymerase III, chi subunit (EC:2.7.7.7)
DNA polymerase III subunit chi n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI5_9GAMM
DNA polymerase III subunit chi {ECO:0000313|EMBL:EIL91226.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1980_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(598..2223)
DNA (1626bp) protein (542aa)
Probable cytosol aminopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI6_9GAMM rbh
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
aminopeptidase A rbh
SCNpilot_expt_1000_bf_scaffold_1980_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2346..3455
DNA (1110bp) protein (370aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI7_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIL91228.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease rbh
SCNpilot_expt_1000_bf_scaffold_1980_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3455..4555
DNA (1101bp) protein (367aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI8_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIL91229.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease rbh
SCNpilot_expt_1000_bf_scaffold_1980_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4626..6752
DNA (2127bp) protein (709aa)
threonine aldolase (EC:4.1.2.5)
Threonine aldolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI9_9GAMM
Threonine aldolase {ECO:0000313|EMBL:EIL91230.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_1980_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6893..8641
DNA (1749bp) protein (583aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Rhodanobacter denitrificans RepID=I4WQX8_9GAMM
ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AGG90184.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1980_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8583..8699
DNA (117bp) protein (39aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Rhodanobacter denitrificans RepID=M4NH11_9GAMM
ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AGG90184.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1980_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8962..10383
DNA (1422bp) protein (474aa)
Sugar transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4V8_9GAMM rbh
Sugar transporter {ECO:0000313|EMBL:EIL94499.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
MFS transporter, sugar porter family rbh
SCNpilot_expt_1000_bf_scaffold_1980_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10573..11595
DNA (1023bp) protein (341aa)
LacI family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRP9_9GAMM rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EIM02141.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1980_10
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11608..11988)
DNA (381bp) protein (127aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FLM5_STIAD
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO74289.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_1000_bf_scaffold_1980_11
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12111..12629
DNA (519bp) protein (173aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
adenine phosphoribosyltransferase n=1 Tax=Dyella japonica RepID=UPI0002D8E461
SCNpilot_expt_1000_bf_scaffold_1980_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12744..13517
DNA (774bp) protein (258aa)
Protein-disulfide isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZD9_9GAMM rbh
protein-disulfide isomerase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1980_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14003..16906
DNA (2904bp) protein (968aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D513C0
TonB-dependent receptor {ECO:0000313|EMBL:AIF46167.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent outer membrane receptor protein
SCNpilot_expt_1000_bf_scaffold_1980_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16976..18553)
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F20F4A
Sulfotransferase {ECO:0000313|EMBL:AIF46166.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1980_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18780..20096)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W879_ACISJ
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1980_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20389..22683
DNA (2295bp) protein (765aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodan
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB8_9GAMM
SCNpilot_expt_1000_bf_scaffold_1980_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22736..23476
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB7_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1980_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23630..24514
DNA (885bp) protein (295aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZD6_9GAMM rbh
putative glycosyltransferase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1980_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24594..25487
DNA (894bp) protein (298aa)
Putative permease, DMT superfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4NJE8_9GAMM rbh
putative permease, DMT superfamily rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1980_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25475..25651)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSJ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90188.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1980_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25627..25977)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99555.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1980_22
unknown

Not on your lists

26417..27685
DNA (1269bp) protein (423aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1980_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28004..28801
DNA (798bp) protein (266aa)
Methyltransferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH7_9GAMM rbh
methyltransferase family protein rbh
Methyltransferase family protein {ECO:0000313|EMBL:AGG87923.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1980_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28829..29023)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSJ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90187.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uncharacterized small protein
SCNpilot_expt_1000_bf_scaffold_1980_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29025..29606)
DNA (582bp) protein (194aa)
Carbon starvation protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB1_9GAMM
Carbon starvation protein {ECO:0000313|EMBL:EIL99552.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
carbon starvation protein, predicted membrane protein
SCNpilot_expt_1000_bf_scaffold_1980_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29603..31072)
DNA (1470bp) protein (490aa)
Carbon starvation protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ82_9GAMM
Carbon starvation protein {ECO:0000313|EMBL:EIL87273.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
carbon starvation protein, predicted membrane protein
SCNpilot_expt_1000_bf_scaffold_1980_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31243..32025
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE9_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87929.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1980_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32107..32643
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peptide deformylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX5_9GAMM rbh
peptide deformylase
SCNpilot_expt_1000_bf_scaffold_1980_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32782..33150
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B49FA
Uncharacterized protein {ECO:0000313|EMBL:EIL88917.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1980_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33178..33423)
DNA (246bp) protein (82aa)
Transcriptional activator FtrA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ88_9GAMM
ftrA; transcriptional activator FtrA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 30 items

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