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SCNpilot_expt_1000_bf_scaffold_3009

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3009_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..932)
DNA (930bp) protein (310aa)
Peptidase M28 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGQ3_9GAMM
Peptidase M28 {ECO:0000313|EMBL:EIL98644.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative aminopeptidase
SCNpilot_expt_1000_bf_scaffold_3009_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1091..2761)
DNA (1671bp) protein (557aa)
protease (EC:3.4.21.100 3.4.21.101); K05998 pseudomonalisin [EC:3.4.21.100]; K05999 xanthomonalisin [EC:3.4.21.101]
Protease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGQ2_9GAMM rbh
Protease {ECO:0000313|EMBL:EIL98643.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_1000_bf_scaffold_3009_3
unknown

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3101..3307
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3009_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4225..5010)
DNA (786bp) protein (262aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG08319.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_3009_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5084..5509
DNA (426bp) protein (142aa)
Flavoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WK39_9GAMM
flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_3009_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5522..6289)
DNA (768bp) protein (256aa)
Glutamine cyclotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W353_9GAMM rbh
Glutamine cyclotransferase {ECO:0000313|EMBL:EIL93894.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glutamine cyclotransferase rbh
SCNpilot_expt_1000_bf_scaffold_3009_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6306..7685)
DNA (1380bp) protein (460aa)
ATP-dependent RNA helicase DbpA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ93_9GAMM rbh
ATP-dependent RNA helicase DbpA {ECO:0000313|EMBL:EIL89384.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA/RNA helicase, superfamily II rbh
SCNpilot_expt_1000_bf_scaffold_3009_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7692..8168
DNA (477bp) protein (159aa)
Dihydroneopterin aldolase n=2 Tax=Rhodanobacter denitrificans RepID=M4NM84_9GAMM
dihydroneopterin aldolase
Dihydroneopterin aldolase {ECO:0000313|EMBL:AGG90768.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3009_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8315..9571
DNA (1257bp) protein (419aa)
MscS mechanosensitive ion channel n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W350_9GAMM rbh
MscS mechanosensitive ion channel {ECO:0000313|EMBL:EIL93891.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative mechanosensitive ion channel forming protein rbh
SCNpilot_expt_1000_bf_scaffold_3009_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9576..10064
DNA (489bp) protein (163aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK43_9GAMM
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EIL93890.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_3009_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10224..11084
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W348_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93889.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3009_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11189..11935)
DNA (747bp) protein (249aa)
Pteridine reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WX46_9GAMM rbh
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_3009_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11990..12673)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX47_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM03297.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3009_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12845..13894
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAC3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87410.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 14 items

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