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SCNpilot_expt_1000_bf_scaffold_3036

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3036_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1181
DNA (1179bp) protein (393aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV04_9GAMM
Outer membrane receptor protein {ECO:0000313|EMBL:EIM03296.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3036_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1295..2482
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX49_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87411.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3036_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2484..4709)
DNA (2226bp) protein (742aa)
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4ND94_9GAMM rbh
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily {ECO:0000313|EMBL:AGG87413.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
phosphoglycerol transferase family protein, alkaline phosphatase superfamily rbh
SCNpilot_expt_1000_bf_scaffold_3036_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4769..6004)
DNA (1236bp) protein (412aa)
Multifunctional CCA protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV00_9GAMM rbh
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA nucleotidyltransferase/poly(A) polymerase rbh
SCNpilot_expt_1000_bf_scaffold_3036_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6134..7099
DNA (966bp) protein (322aa)
Transcription factor jumonji JmjC domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H3_THIK1 rbh
transcription factor jumonji JmjC domain-containing protein rbh
Transcription factor jumonji JmjC domain protein {ECO:0000313|EMBL:ADG31866.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
SCNpilot_expt_1000_bf_scaffold_3036_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7112..8509)
DNA (1398bp) protein (466aa)
Glutamate--cysteine ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV6_9GAMM rbh
Glutamate--cysteine ligase {ECO:0000313|EMBL:EIL92747.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glutamate--cysteine ligase, plant type
SCNpilot_expt_1000_bf_scaffold_3036_7
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8707..9135)
DNA (429bp) protein (143aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Transcription termination factor Rho n=2 Tax=Rhodanobacter denitrificans RepID=M4NI76_9GAMM
transcription termination factor Rho
SCNpilot_expt_1000_bf_scaffold_3036_8
unknown

Not on your lists

9732..10580
DNA (849bp) protein (283aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3036_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10644..10970)
DNA (327bp) protein (109aa)
Thioredoxin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCQ0_9GAMM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thioredoxin
SCNpilot_expt_1000_bf_scaffold_3036_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11354..13078
DNA (1725bp) protein (575aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent RNA helicase RhlB n=2 Tax=Rhodanobacter denitrificans RepID=M4NKJ1_9GAMM rbh
DNA/RNA helicase, superfamily II rbh
SCNpilot_expt_1000_bf_scaffold_3036_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13195..13872
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=2 Tax=Rhodanobacter RepID=I4WTA6_9GAMM rbh
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EIM02698.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell division ATP-binding protein FtsE rbh
SCNpilot_expt_1000_bf_scaffold_3036_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13869..14849
DNA (981bp) protein (327aa)
Cell division protein FtsX n=1 Tax=Rhodanobacter denitrificans RepID=I4WX89_9GAMM rbh
cell division protein rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3036_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14965..15816
DNA (852bp) protein (284aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WX88_9GAMM rbh
response regulator containing a CheY-like receiver domain and a GGDEF domain rbh
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:AGG90594.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3036_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15813..16520
DNA (708bp) protein (236aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Uracil-DNA glycosylase (EC:3.2.2.-) rbh
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WX87_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_3036_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16466..17299)
DNA (834bp) protein (278aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU7_9GAMM rbh
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EIL92738.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_3036_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17296..17736)
DNA (441bp) protein (147aa)
Thiamine biosynthesis protein ThiF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU6_9GAMM
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:EIL92737.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiF; adenylyltransferase ThiF
SCNpilot_expt_1000_bf_scaffold_3036_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18251..18859)
DNA (609bp) protein (203aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Thiamine-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU5_9GAMM rbh
thiE1; thiamine-phosphate pyrophosphorylase
SCNpilot_expt_1000_bf_scaffold_3036_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18856..19626)
DNA (771bp) protein (257aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Thiazole synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU4_9GAMM rbh
thiazole biosynthesis family protein; K03149 thiamine biosynthesis ThiG rbh
SCNpilot_expt_1000_bf_scaffold_3036_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19630..19827)
DNA (198bp) protein (66aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU3_9GAMM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:EIL92734.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiS; thiamine biosynthesis protein ThiS
SCNpilot_expt_1000_bf_scaffold_3036_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19812..20771)
DNA (960bp) protein (320aa)
glycine oxidase ThiO; K03153 glycine oxidase [EC:1.4.3.19]
Glycine oxidase ThiO n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU2_9GAMM rbh
Glycine oxidase ThiO {ECO:0000313|EMBL:EIL92733.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_3036_21
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20777..22030)
DNA (1254bp) protein (418aa)
Thiamine biosynthesis protein ThiC n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M872_NEISI
Uncharacterized protein {ECO:0000313|EMBL:EWS57873.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
Thiamine biosynthesis protein ThiC
Displaying 21 items

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